RNA id: XM_021605550.2


Basic Information

Item Value
RNA id XM_021605550.2
length 3142
RNA type mRNA
GC content 0.49
exon number 16
gene id malt1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20745352 ~ 20755400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGTGTAATATCACTATTTGTAAGCTGTTTCAGGAAGTAACACCAACTCGTCTGAATATTTGTGTCTTTTTGGCCCTCCCCAGAATGATCTTCGGAATTCCCCCAAACTTCTGCAGCGACCATGCCCATGTATCTACCTCTTCTGTGTAGAACACCTGATTTCAAACTACGAGATATTTTTCATTTCACAAATGTTCAGATTTTTTTGCAAGTAACTTTTTCAAATTGACTGAACTGAACTACAGTAACTCGCTGAGATGTCGGATTCATCTGACCGGTCTTTAAACTTAAATTTTCTGAAAGAACCTGTCTTGAGGAAACTGTGTGAGGCTCTGGATAAAACCAACAGTAAAGGATGGCGTAAACTCGGGGAGATGGTCGGCAATGACCGGCGTTTTAGGGTGAGTTCAGATGAGATGGAGATGTGCTCTCTGAAGGTGTTGGAGCTGGAGGGCAGCCCCAGCCGCGTGCTGCTCAGGCTCATGGGAGACAGAGGGTGCACACTGGGCCATCTGGTAGACTTACTACAAACCATGGGCCATACAGAGGCCCTACAGTGTGTCAAACCACCAGGTATCCAGATCCTCATTCAGCCCCAATCTGTGGCTATAATAGTGGGACACAACCTGCGACTCAGCTGTTATGCTGTGGGGAAGGCTGGTGTTCAATTCCAGTGGTTCAAAACCAAGGAAGAGGTACACAACAGTTCTTCTCCAGACCTGGTGATTAGCCCAGTCCAACTGACAGACGCAGGCTTCTACATCTGCAGGGTTAATTGTGGAGACTCCTTTGAGTTCAGCCAGTGGGCTCAGGTGGATGTCCTGAATGTTGCAACACCTTATGGGTTGGGGTCACACTCATTGGAGGGCAGGCTGAAGGTGGTGATCCAGCCCCAGGGCCAGAGACTGCTGGTGGGGGAATCTTTGCAGCTGGAGTGTGGGGCGGTAGGGAGGCCTATCCCCCGCTACCAGTGGCACAGGAACGGGGCGCCCCTTCACTTTCCAGAGGCCTCCAAGAGGAGACTCACGATTCCGTATCTGCTGCTGGAACATAATGGAAAGTATCGTTGTGAGATTTGTATTAACAACGAAAGGACGTGGACGAATGAAGTAGACATTCTAGTGGATGATGTTTTTGCCTTTGGAGCTGGTGCCAGTGAACTAATCCTGAACAGCAATCAAGAACCACCTTATGCGACAGATAAAGTGGCCCTGCTAATCGGGAACCTCTCGTACCGGAACCACCCCCAGCTCAAGGCGCCAATGGTTGATGTGTATGATCTCACCAACCTCCTGCGCCAGCTCAACTTCAAGGTAGTATCGCTGCTGGATCTCACCGAGTCAGAGATGCGCAACGCCGTGGACGAGTTTCTGCTCTTACTTCACAAGGGTGTCTATGGTTTGCTGTACTATGCTGGACATGGTTATGAGAACTATGGCAACAGCTTCATGGTACCGGTGGATGCTCCAAACCCGTATCACTCAGCCAACTGCCTGTGTGTGCAGAGCATCCTCAAACTGATGCAGGAGAAGGAGACAGGCCTCAATGTGTTCCTGTTGGATATGTGCAGGAAGCGaaaTATTCATGATGATACAACCCCAAACATACTATTGAGGGTCACAGCTAACATTGTCTTTGGATATGCAACCTGCCAAGATGCAGAAGCGTTTGAGCTGAGCTCTAGTGGATTCACTAACGGTGTCTTCGTCAAGTTTCTGAAGAAACGTCTTCTGGAGGATGAGAAGATCACTGTGTTGCTGGACAGAGTGGCTGAGGACATGGGCCAGTTCGATGCCACTAAGGGGAAGCAGGCTCTGGAGATCCGCAGCAGCCTATCAGAGAGGAGGGCTCTGACTGACCCTGTACTGCCTGGTGACAGCTCTGACATGGCCCTGGCTCACAACCGTCAGTGGGCCAAGGCTCACGAACTGCCTGAGAGTATGTCTCTGGACTTTGACTGTGGGGCTCAGATCAAGCTGGGCTTCGCTGCAGAGTTCTCCAACGTGCTGGTCATTTACACCCACATCGTGAAGAAACCAGAGGACATGTTCTTCTGCCAGGCTCACGTCACCAACTTCTCCCCGGACCTTGACATTGATCCCAAAGAGATGAACAGGGAGACACCAGAGGAGACTGGCATCTACCTGCTCTCCAGCAGTCTTCCCCAGCACTGCCTGTACACACGCCTCAGCTCTCTACAGAAGCTCAGGGACCAGCTGGGGTTTACAGTTTGTCTACAGGGCTCTTTCAAGGCCATGGATGAGCTGGTGGACTGGACCACTGACGTCAACATCGGCAAGCCTCTGATCGCCAGACTAGACCTGTACCGCACCATGAGGAGGAACAGCTGCCTGCAGACCTGCCCCATGCCCCACAGCCCCTGCCATAGCCCCAGAGCCGagcacctccaccaccacccccaagGCCTTCTCTCCCCACACTGCTCCAGCCCTTACCTGGATGTGTGCGAGCCTTTACAGGGAGCTGTGGGAGGCTCAGGTTGTGTGAGCTCCACTCTGTATGACAACTGCTTCTCTCGCTATGGCTGTACTAGTAGTGACTCCCCTGGCAGAGCCAGCATTCCCATAGAGACCACGGATGACATAAACGAGCTGCAGACAGTCTTCATTAATAGCCTGCAGTTTCACCACCAGTGATGAGGCCCTCTCTAGGGCATTGGTTGCCTGGTGccagatctgtttctgctgtTTTGCTTTCTCCTTTGGCCatcagatctgggatcaggctatggTGGATTTTTGTAGGTCTACTCTGTAAATCCTAGTTTATTCCATGGCAAACTCTTTGATACAGTTGCCTGGCTTTAGTGgagattacatgtatttagtaCTTTAGACTAGATTTTTAAATTGAAATAACTGTCAGAGTTGTATAGCTGTATTTAAAAGGTTACATATCCAGCCTGCTGAGAAAAGGTTGTTTATTGTGATTCTTTTTCCGTTTGTTAGATAATGATGATATAATGTGAACTATTAAGCTTTGCTGAAACGATCTTAACCAGCCTCTTTCATATTCTATAGATGATCTTTTAGAGCAGTTACTAAATGTAATAAAGATGTAATAACTTTATCCACAGGGAGGCGTTGTCTCACTATATAAACAAGAGTTCTGGACATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550385 lncRNA downstream 100304 20641190 ~ 20645048 (-) True G484262
TU550372 lncRNA downstream 113996 20624675 ~ 20631356 (-) True G484249
TU550346 lncRNA downstream 154225 20589234 ~ 20591127 (-) True LOC110525433
TU550343 lncRNA downstream 159132 20584221 ~ 20586220 (-) False LOC110525433
TU550227 lncRNA downstream 229117 20498861 ~ 20516235 (-) True G484136
TU550536 lncRNA upstream 226081 20980396 ~ 20980643 (-) True G484400
TU550548 lncRNA upstream 249730 21004045 ~ 21004375 (-) True G484410
TU550549 lncRNA upstream 250168 21004483 ~ 21004764 (-) True G484411
TU550545 lncRNA upstream 252701 21007016 ~ 21009082 (-) False G484409
TU550562 lncRNA upstream 270527 21024842 ~ 21025595 (-) True G484423
XM_021604959.2 mRNA downstream 15070 20727999 ~ 20730282 (-) False hint2
NM_001165053.2 mRNA downstream 15076 20728013 ~ 20730276 (-) True hint2
XM_021605539.2 mRNA downstream 18382 20713704 ~ 20726970 (-) True LOC110525435
XM_021605540.2 mRNA downstream 18383 20713704 ~ 20726969 (-) False LOC110525435
XM_021605542.2 mRNA downstream 45840 20688144 ~ 20699512 (-) True LOC110525438
XM_021605553.2 mRNA upstream 25396 20779711 ~ 20789607 (-) False LOC110525443
XM_021605554.2 mRNA upstream 25396 20779711 ~ 20789608 (-) False LOC110525443
XM_036979577.1 mRNA upstream 25396 20779711 ~ 20791739 (-) True LOC110525443
XM_021605561.2 mRNA upstream 37857 20792172 ~ 20801637 (-) False mfsd10
XM_021605560.2 mRNA upstream 37857 20792172 ~ 20801643 (-) False mfsd10
TU550351 other downstream 136616 20588262 ~ 20608736 (-) True G484232
TU550345 other downstream 159705 20584221 ~ 20585647 (-) False LOC110525433
TU550275 other downstream 305668 20439307 ~ 20439684 (-) True G484175
TU549918 other downstream 809626 19933244 ~ 19935726 (-) False G483875
TU549032 other downstream 1024736 19710545 ~ 19720616 (-) False G483145
TU550546 other upstream 252701 21007016 ~ 21009082 (-) False G484409
TU550547 other upstream 252701 21007016 ~ 21009082 (-) True G484409
TU550627 other upstream 365661 21119976 ~ 21121067 (-) True LOC110525458
TU551014 other upstream 542265 21296580 ~ 21298173 (-) True G484807
TU551114 other upstream 677615 21431930 ~ 21434719 (-) True G484895

Expression Profile