RNA id: TU550343


Basic Information

Item Value
RNA id TU550343
length 1674
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC110525433
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20584162 ~ 20591588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcttgatatgccataactgtcagatggatggattatcttggcaaaagataaatgctcactaacagggatgcaaacaaatttgtgcaccaaatctgagtgaaataagctttttgtgagtatggaaaactatttcagctcctgaaacatgggactttatatgttgcgtttatatttttgttcagtatataatagAATTTAGCAGAAGTAGCCCATTTATGCTGACTTATGTATCACTATAATGGTATGTTCACAGGTCCAACCTAAGCATCTGCCTTGCATTGGAGTCTCCTGCCTCCATATTGCTGCCAAAATGGTTGAGGATGAGTGTAACATCTCACCCACCCATGAACTCATCCGCATCAGCCAAAGCAAGTTCACTGTTTCTGACCTCAGCCGCATGGAGAAGATAATCTCTGGAAAACTCAATTTGGAGCTCAAAGCCGTCACAGCCTTAACCTTTTTACACTTATACCATGCTGTCATCGTATCACTTACATCAGAAAGATTGTTGACAGTGAGTTACTCTACTGGAGGGGACTTGTGGCCAAATGCATGACTGAGTACCGCTCAAGTGAATGTAACAAACCAGACAACAAAAAACTGTTGTGGATCGTGTCCAGACGAACTGCCCAAAATTTGCACGCTAATAACTTCAGTGTCCCTGAACTGCCGACCATTCCAGAGGGGAGCTGGGGTGAAAGTGAGAGTGAGGATTCCTGTGAGGACATGAGCTGTGAAGAGGACAGCCCGTGCAGCTCTCCTGGCAGCGACGAAAAGGGAGCCTTCTTCCCCGTAGAGTTTCGCAACCAGGGCAGAAAATGATACTCCCTCTTTTTTGATGAGCTCAAACTTGTGATTGAGATTATGTGTAACCAGGGTGCTAAATGTAACTTTCCCTAAATGTACTGTTTCCCCTTCCTTGTAGTCATGGTTCAGGACAAAATAGTTTATTTCACttggcatactgtatgtgtgacaGACTGGTATCAAACTCGGGTTGCCTGCGAGCCTGGATAGCCCTCTCCACTAAAGCCTCGGTGTGGACATAAGTCTTCCTGTCTAAAGCTAGGTTACTGATCACGGGAGCGTAGTCCAACAAACCACCTCTGCTACATACTGGAAATAGTGAACAACAGGCCCTATCAAGTGCCTGTGTTAGTCCATGTACTGTTTTTAAACTTTTGTTATGATTTTAGATCTGAGTGAGATTTAAATTGCAATATCTTGGCAGCTGACTGGCAATAAGATCTTTGAAAGCCTTTTTAAAGATGTTGCTGGTGTCAATCTATGTCCAAATGTGACACATTCCAGGTGACATTAAGCACAATGGTGTAATGACTTTCTTCCTAGGATGTCAAACCTGTGCACTGACTGTTTAAATCAATGGGAAATACCCAACATATTGGTACATTTGTGCAAAACTTGTTTTATAGAATAATATTCATGTAAAAGTGTCCTATACACCATGTTATTGTAATGTGTTTGTAAGATTATATGCAGGATGATACTGTATTCTATGAATGGTGActtgtatgtaaatgtgattgtgTTAGAGAATGATGGTGATTGTTGTCTATTGAGATTCAGTACATGTgcaaaatatttatatttaaacAAATAACAATGTACATAAAATTAAGAAAGTTGTATCATGCTTTGTGAATAGGCCAtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550226 lncRNA downstream 67986 20476734 ~ 20516235 (-) False G484136
TU550227 lncRNA downstream 67986 20498861 ~ 20516235 (-) True G484136
TU550233 lncRNA downstream 105011 20477867 ~ 20479210 (-) False G484137
TU550234 lncRNA downstream 105011 20477867 ~ 20479210 (-) True G484137
TU550279 lncRNA downstream 138380 20444161 ~ 20445841 (-) True G484179
TU550346 lncRNA upstream 3014 20589234 ~ 20591127 (-) True LOC110525433
TU550372 lncRNA upstream 38455 20624675 ~ 20631356 (-) True G484249
TU550385 lncRNA upstream 54970 20641190 ~ 20645048 (-) True G484262
TU550536 lncRNA upstream 394176 20980396 ~ 20980643 (-) True G484400
TU550548 lncRNA upstream 417825 21004045 ~ 21004375 (-) True G484410
XM_021605528.2 mRNA downstream 1216 20566415 ~ 20583005 (-) True LOC110525430
XM_021605520.2 mRNA downstream 32915 20537756 ~ 20551306 (-) True zgc:152968
XM_021605521.2 mRNA downstream 38477 20537756 ~ 20545744 (-) False zgc:152968
XM_036979568.1 mRNA downstream 38745 20537756 ~ 20545476 (-) False zgc:152968
XM_021605506.2 mRNA downstream 119934 20452246 ~ 20464287 (-) False LOC110525421
XM_021605533.2 mRNA upstream 16853 20603073 ~ 20607383 (-) False zgc:158260
XM_021605534.2 mRNA upstream 16853 20603073 ~ 20612600 (-) False zgc:158260
XM_021605535.2 mRNA upstream 16853 20603073 ~ 20612601 (-) False zgc:158260
XM_036979570.1 mRNA upstream 17735 20603955 ~ 20607385 (-) True zgc:158260
XM_021605061.2 mRNA upstream 70275 20656495 ~ 20670677 (-) True LOC110525114
TU550275 other downstream 144537 20439307 ~ 20439684 (-) True G484175
TU549918 other downstream 648495 19933244 ~ 19935726 (-) False G483875
TU549031 other downstream 863605 19710075 ~ 19720616 (-) False G483145
TU549032 other downstream 863605 19710545 ~ 19720616 (-) False G483145
TU548757 other downstream 1010794 19569207 ~ 19573427 (-) True G482907
TU550351 other upstream 2042 20588262 ~ 20608736 (-) True G484232
TU550546 other upstream 420796 21007016 ~ 21009082 (-) False G484409
TU550547 other upstream 420796 21007016 ~ 21009082 (-) True G484409
TU550627 other upstream 533756 21119976 ~ 21121067 (-) True LOC110525458
TU551014 other upstream 710360 21296580 ~ 21298173 (-) True G484807

Expression Profile