RNA id: XM_021605061.2


Basic Information

Item Value
RNA id XM_021605061.2
length 2793
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110525114
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20656495 ~ 20670677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGGCAGCTGTGTTGATCCAGCGCTGGTACCGTCAATATGTGGCTCGTATGGAGATGAGACGCAGATACACCTGGAACATCTTCCAGTCTATAGAATACTCTGGGGAGCAGGCCCAGATCAAACTTTACAATTTCCTTGGCTACCTCATGGACAACTTCAACCCAACTAGCACTGAACGCAACTTAATCTCCCACATATTCAGAGAGAATGAAGTGTGCCGCGATACAGAGTGGGAGAGGCACTTCTGCTATAAGAATATTGAGGTGCCAGAGATCTACTCAGGTCCCCGTCTCATCTTCCCTCTTACTGTGGAACAAGTGGCTTCCATGGTAGAGGCCTTCAGGAATAAAAGACAGCTCCACTCTCGGTACGTTCTCCAACTTCTCCTGGAAACATGGAAGTTACTCCGAAAGCTGCCAAATATCAGTCGAATCTCCACCTGTCACAGCAAAGAAATCACTGTTTGTGGTGATTTACATGGGCAGCTTGAAGACCTGCTGTTGATATTTTACAAGAATGGCATGCCATCATTGGATCGGCCATATGTTTTCAATGGAGACTTTGTTGATCGAGGCAAAGATTCCATTGAGATTCTCCTCATCCTTTTTGCCTTCCTGCTCGTGTATCCAAACGATGTTCACCTCAACAGGGGAAACCATGAAGACCATATTGTCAACTTGAGgTATGGCTTCACCAAGGAGGTGTTGGGGAAATACAAGATGCACGGCAAGAGGATCCTAAAGCTGCTTCAGAAGATCTTCAGCTGGTTGCCCCTGGCAACAGTCATCGATCAGAAAGTGTTGATCCTGCATGGGGGCATCTCCAACACCACGGACCTCTGCCTCATAGCCAGAGTGGACAGACACAAATACGTGTCAGCCCTGAGGCCTCCTAAGAAGAGGACACAATACCCAGTGAGTCAGTCCTCTGTGGACTTGGACATGGAAGACGACCTGTCAGGCACCAAGAACAACCAGCGCCGGGTCTCCCTGATCAAGGCCAACTCCTTCGGACCCCGGGATGGCTTCCAGCGCCGCTCACTCCAGGACTTTTCCGGCAGGGTCCCCCGGACCGTTGACGAGGAGATAGAGGTGCGGCGGAGGCAGTCCGGCTTCATCAAGGGCGGCTTCAGCCACAGTCAGGGGGAACTCAATAACCTGGCCGTCTCCTCAGCATCGCAGGAATCCACCGACACAGCAGACACTACCGTAGAGGAGTGGAAACAGATTCTGGACCTACTGTGGAGTGACCCCATGTCTCAGAACGGCTGCATACCCAACGAAGTGCGGGGAGGAGGCTGCTACTGGGGGCCAGACGTCACTCAGGACTTCCTGGACAGACACAACATGCAGCTCATCATCCGCTCCCACGAGTGCAAGCAGGATGGCTACGAGTTTTGCCACAACCGCAGGGTCCTCACCCTGTTCTCTGCCTCCAACTACTATGAAGTGGGCAGCAACAGAGGGGCCTACGTGAAATTGGGACCAGACCTAGTGCCTTATTTGATTCAGTACCAGGCTAGCAGTATGACTCGAGAACTCACCCTCAGGAAAAATGTGGGGAAGGTGGAACATTCAGCCCTCAAGGTCCTGCGGGAACAGCTGTTTGCACACAAGTCTGACCTCGTCAGTGCCTTCCAAGAGTTTGACAAAGACAAAACAGGTGTCGTGTCTCTGAATGACTGGGCTACGGCGGTAGAGAGTGTGCTGCGTCTAGGCCTACCCTGGAGGATGCTGCGCTTTCAGCTGGCCACCTGCAAGACCCCGGGGGGCATGTTGGACTACCAGGAGTGGTTCCAGGAACTCTCCATAAAAGAGCCACAAATGGAGCACATCGATCAGGGTTTGCTGGAGACCCTGTACCGCCATCGCGCCACCTTGGAGACCATCTTCAGAATAGTGGATTTAGACAACTCAGGGTTCATCACAATGGAGGACTTCCGTCAGACGTGGAAGCTGCTGAGTGCCTTCTTAAAGATGGAGATCACTGACGAGGCTATCTCGGACCTGGCCGTCACCATAGACACCAACCAGGACGGCAACATTGACATCGATGAGTTCATGGAGGCCTTCCGGCTGACAGACAAGAAAAGCCGGctggagaggggaaagagcatgTTTATGGGGACCACCACTGACCTGACCAAACTAGAGGGGGACCCCAATATATGAGGGATTAGTGGGACTGGAGGGGAAGCCCAACAAGTATGTAGTAGtttgagtaaaaaaaacaaaaaaaacagacactATCCACTCAAGACCAACAAACTACTACTAGTGGGAGAAGTTccgtatggagagagagaatgactgcTTGTTTATTACCTCAGGGGCTATGGAGGTAGCGCACAAACAAACAAGCCAACAAGCTGCTTTGATCATTGACGCACATTGAGACACTGAGACTATGGAGTGTTACAGCAGTGTCGATTAGGCTAGAAGGTGGTTGGCAGACCATCTCCTTGGTGATTAGAGCGTATGGCTGGATTTTATTTTCGTCATAGGTTGAAGTTCAATAAGACACCACAGAGTGATGTAGTTTTGGATGAATTCAGTATGTATGCAGATGCAGAGGCCAACAACAAATATACACAACGTTGTCATAGTTGATGTCCTTCCAAGCGGAGTGACTTGCACATAATTTGAAACGTTCAAATATGAAAAACATTATATTTTTGCCAGATTCATGTAAATAGATCCGGACTGTTATTGGTGCCTTAGTGATAGAATAGGGAAAGCATTCCATCATTTTAGTGAAACTCTTATTAATGTACTGATTGAATCGTGTCA

Function

GO: NA

KEGG:

id description
K13807 PPEF, PPP7C; serine/threonine-protein phosphatase with EF-hands

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550385 lncRNA downstream 11447 20641190 ~ 20645048 (-) True G484262
TU550372 lncRNA downstream 25139 20624675 ~ 20631356 (-) True G484249
TU550346 lncRNA downstream 65368 20589234 ~ 20591127 (-) True LOC110525433
TU550343 lncRNA downstream 70275 20584221 ~ 20586220 (-) False LOC110525433
TU550227 lncRNA downstream 140260 20498861 ~ 20516235 (-) True G484136
TU550536 lncRNA upstream 309719 20980396 ~ 20980643 (-) True G484400
TU550548 lncRNA upstream 333368 21004045 ~ 21004375 (-) True G484410
TU550549 lncRNA upstream 333806 21004483 ~ 21004764 (-) True G484411
TU550545 lncRNA upstream 336339 21007016 ~ 21009082 (-) False G484409
TU550562 lncRNA upstream 354165 21024842 ~ 21025595 (-) True G484423
XM_021605535.2 mRNA downstream 43894 20603073 ~ 20612601 (-) False zgc:158260
XM_021605534.2 mRNA downstream 43895 20603073 ~ 20612600 (-) False zgc:158260
XM_036979570.1 mRNA downstream 49110 20603955 ~ 20607385 (-) True zgc:158260
XM_021605533.2 mRNA downstream 49112 20603073 ~ 20607383 (-) False zgc:158260
LOC110525433 mRNA downstream 64907 20584162 ~ 20591588 (-) False LOC110525433
XM_021605542.2 mRNA upstream 17467 20688144 ~ 20699512 (-) True LOC110525438
XM_021605540.2 mRNA upstream 43027 20713704 ~ 20726969 (-) False LOC110525435
XM_021605539.2 mRNA upstream 43027 20713704 ~ 20726970 (-) True LOC110525435
XM_021604959.2 mRNA upstream 57322 20727999 ~ 20730282 (-) False hint2
NM_001165053.2 mRNA upstream 57336 20728013 ~ 20730276 (-) True hint2
TU550351 other downstream 47759 20588262 ~ 20608736 (-) True G484232
TU550345 other downstream 70848 20584221 ~ 20585647 (-) False LOC110525433
TU550275 other downstream 216811 20439307 ~ 20439684 (-) True G484175
TU549918 other downstream 720769 19933244 ~ 19935726 (-) False G483875
TU549031 other downstream 935879 19710075 ~ 19720616 (-) False G483145
TU550546 other upstream 336339 21007016 ~ 21009082 (-) False G484409
TU550547 other upstream 336339 21007016 ~ 21009082 (-) True G484409
TU550627 other upstream 449299 21119976 ~ 21121067 (-) True LOC110525458
TU551014 other upstream 625903 21296580 ~ 21298173 (-) True G484807
TU551114 other upstream 761253 21431930 ~ 21434719 (-) True G484895

Expression Profile