LOC110525500 (LOC106585450)


Basic Information

Item Value
gene id LOC110525500
gene name LOC106585450
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22593509 ~ 22617566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605652.2
TATTGGTTTGTAGTATACTAGAACCATACCCAATTTACTGTGTGGGTTACCGGTGGCATGTCAGTTGCATTTTCTTCCTAGCTTTAGCTTGCGATATGTGGAAAAGAGATCAAATGTCATGATAGAAGAATTAGAGGCTGTTTGAACAGAAAAGTGCCTGACAAATGTATTGCTTGTTCTACAATGTATTGTACTCCAAGATTTCAAGACGGGTCAGTAGTTAGTCAAGAGCATTTGAGTCAGCATCGTATCAAGCACACAGAATAAAAAGTTGTGAGGTGCCAATACACACTGTGGTCGGTCTCAAGgtccattacaataCCCTTCAATGGCTTTTTTTGTGAAAAAGAAGAAATTCAAGTTTCAGACACATTTGACATTGGAGGAGCTGACTGCAGTGCCTTTCGTGAACGGGGTATTGTTCTGCAAGCTGAGATTGTTGGACGGTGGAGACTTTGTTGCAACTTCATCAAGAGAGGAGGTTCAGGAGAACTGTGTTTGCTGGAAGAAGAGGTTTACCTTTGTGTGTAAAATGAGCACCAACCCCACGACTGGAGTGCTGGATTCCGCCATCTGTCGGGTCTCTGTGCGGAAGGAACTCAAAGGAGGAAAAACATATTCAAAGCTGGGTTTTACTGACCTCAACATGGCAGAGTTCGCTGGCTCGGGCTCTGCAGTCCGCTGTTGTCTGCTGGAGGGATACGACACCAAGAATACTAGGCAGGACAACTCCATACTGAAGGTGACTATTGGGATGGCCCTCCTATCTGGAGATCCGTGCTTTAAAACTGCCCCCAGCACAGCCAAGTCCATCTCCATCACAGGCCAGGACCATGTCCTGCAGCTGGACTGTAAGGGGGATGGCACTGGAACCCCTAACCGGCCCACTTCTCTGGGCCAGTCCATGAAGCCCAGGCCCTCGATCATCAGCTCAGGTCTTCCAGAGGAGTCAGACCAGACCCAGGCAGCTAGCCCAGGGGAAGTATTCCAGTCGGGGCACTCTCGTAACTCCAGCTATGCCAGCCAGCTGAGCAGGATCTCAGGCTGCAGCACAGAGCACTCCTGCTCCTCTAGTATGTCTGACCTCACACACAGGAGGAACACCTCCACAGGAAGCGGCATATCTGGGGGCCTCAGTGTGACAGTAGACACtccaacagagggagagaggccaGGGagaccccctctaccccctcggCCCGTCTTGCCATCCAACAGACCCCCCAGGAGGAAGCAGGATTCAGTGGAGAGCCATCCCTCCTGGGTGAATGACACCCGCATCGATGCCGACGATATTGTTGAAAAGATCATCCAGAGCCAGAACTTTGCTGACATAAGTAACACTGAAGACAGTAACCTGCGACTGTTTGTCAGTAGAGACGGCACCACATCCCTGAATGGTTTACTGCGcagtaacagGGTGTGTGCTGGTGTCTATGAGCAAGTGGTGATAGAGAGCCATTACGACTGGTGAAGATTAATTTTAATTGAGGCCTCTGCAATGAAGCTTGTGGACTAACT
>XM_021605655.2
GGTATTGGTTTGTAGTATACTAGAACCATACCCAATTTACTGTGTGGGTTACCGGTGGCATGTCAGTTGCATTTTCTTCCTAGCTTTAGCTTGCGATATGTGGAAAAGAGATCAAATGTCATGATAGAAGAATTAGAGGCTGTTTGAACAGAAAAGTGCCTGACAAATGTATTGCTTGTTCTACAATGTATTGTACTCCAAGATTTCAAGACGGGTCAGTAGTTAGTCAAGAGCATTTGAGTCAGCATCGTATCAAGCACACAGAATAAAAAGTTGTGAGGTGCCAATACACACTGTGGTCGGTCTCAAGgtccattacaataCCCTTCAATGGCTTTTTTTGTGAAAAAGAAGAAATTCAAGTTTCAGACACATTTGACATTGGAGGAGCTGACTGCAGTGCCTTTCGTGAACGGGGTATTGTTCTGCAAGCTGAGATTGTTGGACGGTGGAGACTTTGTTGCAACTTCATCAAGAGAGGAGGTTCAGGAGAACTGTGTTTGCTGGAAGAAGAGGTTTACCTTTGTGTGTAAAATGAGCACCAACCCCACGACTGGAGTGCTGGATTCCGCCATCTGTCGGGTCTCTGTGCGGAAGGAACTCAAAGGAGGAAAAACATATTCAAAGCTGGGTTTTACTGACCTCAACATGGCAGAGTTCGCTGGCTCGGGCTCTGCAGTCCGCTGTTGTCTGCTGGAGGGATACGACACCAAGAATACTAGGCAGGACAACTCCATACTGAAGGTGACTATTGGGATGGCCCTCCTATCTGGAGATCCGTGCTTTAAAACTGCCCCCAGCACAGCCAAGTCCATCTCCATCACAGGCCAGGACCATGTCCTGCAGCTGGACTGTAAGGGGGATGGCACTGGAACCCCTAACCGGCCCACTTCTCTGGGCCAGTCCATGAAGCCCAGGCCCTCGATCATCAGCTCAGAGGAGTCAGACCAGACCCAGGCAGCTAGCCCAGGGGAAGTATTCCAGTCGGGGCACTCTCGTAACTCCAGCTATGCCAGCCAGCTGAGCAGGATCTCAGGCTGCAGCACAGAGCACTCCTGCTCCTCTAGTATGTCTGACCTCACACACAGGAGGAACACCTCCACAGGAAGCGGCATATCTGGGGGCCTCAGTGTGACAGTAGACACtccaacagagggagagaggccaGGGagaccccctctaccccctcggCCCGTCTTGCCATCCAACAGACCCCCCAGGAGGAAGCAGGATTCAGTGGAGAGCCATCCCTCCTGGGTGAATGACACCCGCATCGATGCCGACGATATTGTTGAAAAGATCATCCAGAGCCAGAACTTTGCTGACATAAGTAACACTGAAGACAGTAACCTGCGACTGTTTGTCAGTAGAGACGGCACCACATCCCTGAATGGTTTACTGCGcagtaacagGGTGTGTGCTGGTGTCTATGAGCAAGTGGTGATAGAGAGCCATTACGACTGGTGAAGATTAATTTTAATTGAGGCCTCTGCAATGAAGCTTGTGGACTAACT
>XM_036979627.1
GGAAGAAGGGGTTTGCACTTACAGGAAACTACGACAGCGTGATCGTTACAAATATGTGTAATTTCGAGGAATAACCAAATACAACACTCAAAATGTAAAACTTGATGTGAACCCCGCTGAAGCATAAATACATAGAGGAGGTTCAGGAGAACTGTGTTTGCTGGAAGAAGAGGTTTACCTTTGTGTGTAAAATGAGCACCAACCCCACGACTGGAGTGCTGGATTCCGCCATCTGTCGGGTCTCTGTGCGGAAGGAACTCAAAGGAGGAAAAACATATTCAAAGCTGGGTTTTACTGACCTCAACATGGCAGAGTTCGCTGGCTCGGGCTCTGCAGTCCGCTGTTGTCTGCTGGAGGGATACGACACCAAGAATACTAGGCAGGACAACTCCATACTGAAGGTGACTATTGGGATGGCCCTCCTATCTGGAGATCCGTGCTTTAAAACTGCCCCCAGCACAGCCAAGTCCATCTCCATCACAGGCCAGGACCATGTCCTGCAGCTGGACTGTAAGGGGGATGGCACTGGAACCCCTAACCGGCCCACTTCTCTGGGCCAGTCCATGAAGCCCAGGCCCTCGATCATCAGCTCAGGTCTTCCAGAGGAGTCAGACCAGACCCAGGCAGCTAGCCCAGGGGAAGTATTCCAGTCGGGGCACTCTCGTAACTCCAGCTATGCCAGCCAGCTGAGCAGGATCTCAGGCTGCAGCACAGAGCACTCCTGCTCCTCTAGTATGTCTGACCTCACACACAGGAGGAACACCTCCACAGGAAGCGGCATATCTGGGGGCCTCAGTGTGACAGTAGACACtccaacagagggagagaggccaGGGagaccccctctaccccctcggCCCGTCTTGCCATCCAACAGACCCCCCAGGAGGAAGCAGGATTCAGTGGAGAGCCATCCCTCCTGGGTGAATGACACCCGCATCGATGCCGACGATATTGTTGAAAAGATCATCCAGAGCCAGAACTTTGCTGACATAAGTAACACTGAAGACAGTAACCTGCGACTGTTTGTCAGTAGAGACGGCACCACATCCCTGAATGGTTTACTGCGcagtaacagGGTGTGTGCTGGTGTCTATGAGCAAGTGGTGATAGAGAGCCATTACGACTGGTGAAGATTAATTTTAATTGAGGCCTCTGCAATGAAGCTTGTGGACTAACT
>XM_021605653.2
CGGGTGCAGGAAGAAGGGGTTTGCACTTACAGGAAACTACGACAGCGTGATCGTTACAAATATGTGTAATTTCGAGGAATAACCAAATACAACACTCAAAATGTAAAACTTGATGTGAACCCCGCTGAAGCATAAATACATgtccattacaataCCCTTCAATGGCTTTTTTTGTGAAAAAGAAGAAATTCAAGTTTCAGACACATTTGACATTGGAGGAGCTGACTGCAGTGCCTTTCGTGAACGGGGTATTGTTCTGCAAGCTGAGATTGTTGGACGGTGGAGACTTTGTTGCAACTTCATCAAGAGAGGAGGTTCAGGAGAACTGTGTTTGCTGGAAGAAGAGGTTTACCTTTGTGTGTAAAATGAGCACCAACCCCACGACTGGAGTGCTGGATTCCGCCATCTGTCGGGTCTCTGTGCGGAAGGAACTCAAAGGAGGAAAAACATATTCAAAGCTGGGTTTTACTGACCTCAACATGGCAGAGTTCGCTGGCTCGGGCTCTGCAGTCCGCTGTTGTCTGCTGGAGGGATACGACACCAAGAATACTAGGCAGGACAACTCCATACTGAAGGTGACTATTGGGATGGCCCTCCTATCTGGAGATCCGTGCTTTAAAACTGCCCCCAGCACAGCCAAGTCCATCTCCATCACAGGCCAGGACCATGTCCTGCAGCTGGACTGTAAGGGGGATGGCACTGGAACCCCTAACCGGCCCACTTCTCTGGGCCAGTCCATGAAGCCCAGGCCCTCGATCATCAGCTCAGGTCTTCCAGAGGAGTCAGACCAGACCCAGGCAGCTAGCCCAGGGGAAGTATTCCAGTCGGGGCACTCTCGTAACTCCAGCTATGCCAGCCAGCTGAGCAGGATCTCAGGCTGCAGCACAGAGCACTCCTGCTCCTCTAGTATGTCTGACCTCACACACAGGAGGAACACCTCCACAGGAAGCGGCATATCTGGGGGCCTCAGTGTGACAGTAGACACtccaacagagggagagaggccaGGGagaccccctctaccccctcggCCCGTCTTGCCATCCAACAGACCCCCCAGGAGGAAGCAGGATTCAGTGGAGAGCCATCCCTCCTGGGTGAATGACACCCGCATCGATGCCGACGATATTGTTGAAAAGATCATCCAGAGCCAGAACTTTGCTGACATAAGTAACACTGAAGACAGTAACCTGCGACTGTTTGTCAGTAGAGACGGCACCACATCCCTGAATGGTTTACTGCGcagtaacagGGTGTGTGCTGGTGTCTATGAGCAAGTGGTGATAGAGAGCCATTACGACTGGTGAAGATTAATTTTAATTGAGGCCTCTGCAATGAAGCTTGTGGACTAACT

Function

NR:

description
protein FAM102A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605652.2 False 1521 mRNA 0.50 12 22593509 22612376
XM_021605655.2 False 1514 mRNA 0.50 12 22593509 22612378
XM_036979627.1 False 1180 mRNA 0.52 11 22593509 22617558
XM_021605653.2 True 1354 mRNA 0.51 12 22593509 22617566

Neighbor

gene id symbol gene type direction distance location
LOC110525497 LOC106585448 coding downstream 14111 22572786 ~ 22579398 (-)
LOC110525498 shlb2 coding downstream 20948 22550214 ~ 22572561 (-)
LOC110525495 LOC102784428 coding downstream 129148 22460769 ~ 22464361 (-)
LOC110525493 LOC106585445 coding downstream 135761 22441244 ~ 22457748 (-)
LOC110525492 rpl35 coding downstream 152373 22438886 ~ 22441136 (-)
LOC110525501 LOC106585453 coding upstream 10389 22627955 ~ 22636391 (-)
LOC110525506 LOC106585454 coding upstream 26586 22642795 ~ 22646088 (-)
ptgesl LOC106585457 coding upstream 65019 22682585 ~ 22692496 (-)
derl3 derl2 coding upstream 109519 22727085 ~ 22730428 (-)
LOC110525508 LOC106585459 coding upstream 112941 22730507 ~ 22746609 (-)
G486594 NA non-coding downstream 5314 22587974 ~ 22588195 (-)
G486586 NA non-coding downstream 13303 22580000 ~ 22580206 (-)
G486575 NA non-coding downstream 49873 22543363 ~ 22543636 (-)
G486573 NA non-coding downstream 52698 22540602 ~ 22540811 (-)
G486037 NA non-coding downstream 63676 22528485 ~ 22529833 (-)
G486623 NA non-coding upstream 19188 22636754 ~ 22636967 (-)
G486642 NA non-coding upstream 49205 22666771 ~ 22667052 (-)
G486643 NA non-coding upstream 50250 22667816 ~ 22668420 (-)
G486647 NA non-coding upstream 56647 22674213 ~ 22674454 (-)
G485877 NA other downstream 312483 22280726 ~ 22281026 (-)
G485864 NA other downstream 330156 22260634 ~ 22263353 (-)
G485279 NA other downstream 759149 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1158790 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1295336 21296580 ~ 21298173 (-)
G486716 NA other upstream 220087 22837653 ~ 22840566 (-)
G486953 NA other upstream 633720 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 767968 23385534 ~ 23385907 (-)
G487016 NA other upstream 772451 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 965470 23582127 ~ 23587892 (-)

Expression


Co-expression Network