LOC110525563 (LOC106585507)


Basic Information

Item Value
gene id LOC110525563
gene name LOC106585507
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23911741 ~ 23914297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605779.2
CGCAAGCAGTAAACTGCGCCGCACACAGAAACAGCATTGGATTGTGGGTAAAATAATATCTTGTGTTTCCTGAATTAGTTATGGCAACAGTAGCAGAAGGTTAACGTTTATagaaataacgttttttttttcttctttagtTTAGAAGTTCAATTATATGTCAATTCGCATGAGACCGCATCTTGTGTAGAACTACAGGTTGACAGCTTGAAAAGTTATAACGGTAGCCAGCAATGAGTTTGAACGAACACTCTTTGCAAGCTCTGTCATGGAGAAAACTTTACTTGAGTCGAGCAAAGCTGAAGGCTACGAGCAGAACTTCAGCTCTCCTGTCGGGTTTCGCGATGGTGGCTATGGTGGAGGTGCAGCTGGAGCCAGATCATGTGTATCCCCCAGGGCTGCTGATAGCCTTCAGCGCCTGCACCACTGTCCTAGTGGCAGTGCACCTCTTCGCCCTGATGATCAGCACCTGTATCCTGCCAAACCTGGAGGCCGTCAGCAACGTTCACAACTTGAACTCGGTCAACGAGTCACCCCATGAGCGCATGCACCGCCACATTGAGCTGGCCTGGGCCTTCTCCACTGTTATTGGTACCCTGCTCTTCCTGACCGAGGTGGTTCTGCTGTGCTGGGTCAAGTTCCTGCCCCTCAGGCGCCCAACTGATAATGGCACCATCAGTTCTGGTGAGGCGGCAGCCATTGCCTCCACCTCCATCATGGTGCCATTTGGATTGGTGTTTATCGTCTTCGCTGTGCACTTCTACCGCTCTCTGGTCAGTCACAAAACTGATCGTCAGTTTCAGGAGCTGGAGGAGCTGTCCAATATCACCCGGCTGCAGAACCAGCTGGACCACAGGGCAGAGACGACCAGTCTGCAGCCCTCCTCTGTCCACTTCCCCTAACGGGAATTAGACAGCTGTAAGAAATCTATAatgaagcttttttttt
>TU553786
ATGGCAACAGTAGCAGAAGGTTAACGTTTATagaaataacgttttttttttcttctttagtTTAGAAGTTCAATTATATGTCAATTCGCATGAGACCGCATCTTGTGTAGAACTACAGGTTGACAGCTTGAAAAGTTATAACGGTAGCCAGCAATGAGTTTGAACGAACACTCTTTGCAAGCTCTGTCATGGAGAAAACTTTACTTGAGTCGAGCAAAGCTGAAGGCTACGAGCAGAACTTCAGCTCTCCTGTCGGGTTTCGCGATGGTGGCTATGGTGGAGGTGCAGCTGGAGCCAGATCATGTGTATCCCCCAGGGCTGCTGATAGCCTTCAGCGCCTGCACCACTGTCCTAGTGGCAGTGCACCTCTTCGCCCTGATGATCAGCACCTGTATCCTGCCAAACCTGGAGGCCGTCAGCAACGTTCACAACTTGAACTCGGTCAACGAGTCACCCCATGAGCGCATGCACCGCCACATTGAGCTGGCCTGGGCCTTCTCCACTGTTATTGGTACCCTGCTCTTCCTGACCGAGGTGGTTCTGCTGTGCTGGGTCAAGTTCCTGCCCCTCAGGCGCCCAACTGATAATGGCACCATCAGTTCTGGTGAGGCGGCAGCCATTGCCTCCACCTCCATCATGGTGCCATTTGGATTGGTGTTTATCGTCTTCGCTGTGCACTTCTACCGCTCTCTGGTCAGTCACAAAACTGATCGTCAGTTTCAGGAGCTGGAGGAGCTGTCCAATATCACCCGGCTGCAGAACCAGCTGGACCACAGGGCAGAGACGACCAGTCTGCAGCCCTCCTCTGTCCACTTCCCCTA

Function

NR:

description
PREDICTED: calcium release-activated calcium channel protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605779.2 False 948 mRNA 0.50 2 23911741 23914297
TU553786 True 821 TUCP 0.52 2 23911821 23914250

Neighbor

gene id symbol gene type direction distance location
LOC110525560 LOC106585504 coding upstream 26773 23857854 ~ 23884968 (+)
LOC110525559 LOC106585501 coding upstream 64400 23841475 ~ 23847341 (+)
ggt5a LOC106585500 coding upstream 110590 23791444 ~ 23801151 (+)
LOC110525549 hnf1a coding upstream 208450 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 301914 23608673 ~ 23609827 (+)
LOC110525298 LOC106585338 coding downstream 11549 23925846 ~ 23941878 (+)
LOC110525570 LOC106585512 coding downstream 127732 24042029 ~ 24042359 (+)
LOC110525569 LOC106585512 coding downstream 128223 24042520 ~ 24046202 (+)
LOC110525573 LOC106585515 coding downstream 165994 24080291 ~ 24122599 (+)
rflna LOC106585519 coding downstream 387439 24301736 ~ 24314535 (+)
G487257 LOC106585505 non-coding upstream 17479 23893201 ~ 23894262 (+)
G487255 LOC106585505 non-coding upstream 20562 23889587 ~ 23891179 (+)
G487249 NA non-coding upstream 34717 23876818 ~ 23877024 (+)
G487248 NA non-coding upstream 35290 23876128 ~ 23876451 (+)
G487236 NA non-coding upstream 63482 23848041 ~ 23848259 (+)
G487273 NA non-coding downstream 1161 23915458 ~ 23915639 (+)
G487298 NA non-coding downstream 43684 23957981 ~ 23958251 (+)
G487307 NA non-coding downstream 58982 23973279 ~ 23973525 (+)
G487330 NA non-coding downstream 99113 24013410 ~ 24013807 (+)
G487146 LOC106585492 other upstream 243814 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 379942 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 719824 23079630 ~ 23197514 (+)
G486127 NA other upstream 1237289 22674242 ~ 22674452 (+)
G485780 NA other upstream 1467122 22441316 ~ 22444619 (+)
G488049 NA other downstream 665664 24579961 ~ 24586313 (+)
G488078 NA other downstream 716672 24630969 ~ 24631396 (+)
G488258 NA other downstream 1024472 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1724564 25638816 ~ 25641178 (+)
G489447 NA other downstream 1769389 25683686 ~ 25684311 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018759 orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888 coding CM030135.1 CM030135.1 19959738 ~ 19966779 (+)