si:ch211-113d22.2 (LOC106585007)


Basic Information

Item Value
gene id si:ch211-113d22.2
gene name LOC106585007
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31860166 ~ 31864841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606180.2
GAGTGAATACAGTACAGGCAACAGTACTGACAGTATACCTGACCCTGTCAAAGCTACCCTGGGTAAGCTCATTAACACAATAACAAAGGGTGCTGGGTGTGCAGGGTTGATAGGGATTAGGGCTAAGATGTTATTGCCCCCAAGACACCCCTGCCcccattctcttttctctcctctgcgtttacctcctctctgctcccattctcttttctctcctctgcgTTTTACCTCCTCTCTGCCcccattctcttttctctcctctgcgTTTACCTCCTCTCTGCTCCCACTCCAGCACTATGAAGACTGTCCTGGCTCTGCTGATGTTGGTATGCCTGGCCTGCCACAGTCACGCACTGAAGTGTCACTCATGCGTAGCGTCCAATGAGGATGATTGTACTAAACAAGGATCCACCACCTGCCCTCAATTCGCTGACGCCTGCTCCACCATCACAGGACAGAACACGGTGATGAAGTCATGCTCCTACAAAGCATTCTGTGATAAGGCCCACAGTGGCAACTCTGGAGCCAAGATGGAGTGTTGTTTCACTGATGACTGCAATGGGCCTCATAAGGGCCACCAGCATGGGGAGCACAAAAACACAGCTGGAGCCCTGGGAGCCAGCCCTGCTCTGCTACTTGGGGCTCTGATGCTCCGCATGGCCCTCAGCAGGTTCTAAACTCATGATCATAAATACATTCATCCATTTACTATCCATCTATCCATGTATTCATTATTTCATACAGCGCTACCACGAAACCATTTATCCATCCATCCCCTCAGAGTGTGTCTGCAGAATGCTGATGAACTAGGGTTTGGTGAATCATACAGGGATtagtaagagtgtgtgtgtgatgcctgtggtggtggtggtggtggggggggggggggggggggtcagtaaaGCACATTCAATCAAGTTTAAAGACAGATGGAACTGATGTATCACTCCGCATGATTCAGCTCTGTCACAGTTGTGTGTCCGTAACCAGTCTTATGTACAAacggagatgtttgatatgatcAGAGAGAGGATGGAACTCCTGTAGTGTCAGTAGACTCTGGGTGGATGTGAGCCAGGATGGGGTTAGAACTTTAGATGTATATACTATGTTTATACCTGGGGCTGATCTGAAATGTCACCCATGGTagcctgtgtgtatgtatgataCTGTTGGTTAGTGCTGGGCTCCCAGTAGGCCTAGTGTTAGGCTCGTTCCCACAGTAACCACATACGCTAGGGCACTCTTCAGCCTTCAGACTCCAATCATCATGAATTAAACAGGAACTCAACACTGAAAGACATGTTGGTACTTGTTGGTCCATTGTTAATATTGTTATGCTTCAATACTTATTTATAAATAAACATGCTATTACACCCTTACATTTCCTTTCTA

Function

NR:

description
PREDICTED: activin receptor type-1C-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606180.2 True 1395 mRNA 0.48 3 31860166 31864841

Neighbor

gene id symbol gene type direction distance location
LOC110525762 LOC106585005 coding downstream 2878 31828730 ~ 31857288 (-)
LOC110525759 LOC106585003 coding downstream 35820 31800969 ~ 31824346 (-)
LOC118964859 NA coding downstream 53514 31804840 ~ 31806652 (-)
LOC110525757 LOC106585001 coding downstream 101662 31735854 ~ 31758504 (-)
gatc gatc coding downstream 203867 31652136 ~ 31656299 (-)
LOC110525764 LOC106585006 coding upstream 2087 31866928 ~ 31903950 (-)
srrd srrd coding upstream 79708 31944549 ~ 31947393 (-)
LOC110525767 LOC106584919 coding upstream 108991 31973832 ~ 31984689 (-)
LOC110517556 dnajb5 coding upstream 156900 32021741 ~ 32033670 (-)
epg5 epg5 coding upstream 184346 32049187 ~ 32071847 (-)
G496801 NA non-coding downstream 100711 31759147 ~ 31759455 (-)
G496789 NA non-coding downstream 155121 31704664 ~ 31705045 (-)
G496776 NA non-coding downstream 190530 31669254 ~ 31669636 (-)
G496775 NA non-coding downstream 191809 31668033 ~ 31668357 (-)
G496771 NA non-coding downstream 200219 31659480 ~ 31659947 (-)
G496919 NA non-coding upstream 129617 31994458 ~ 31994683 (-)
G496920 NA non-coding upstream 130435 31995276 ~ 31995499 (-)
G496932 NA non-coding upstream 159087 32023928 ~ 32024730 (-)
G496950 NA non-coding upstream 218046 32082887 ~ 32083103 (-)
G496956 NA non-coding upstream 228607 32093448 ~ 32093762 (-)
G496777 NA other downstream 188239 31670978 ~ 31671927 (-)
G496772 NA other downstream 198548 31661393 ~ 31661618 (-)
G495560 NA other downstream 1284593 30575118 ~ 30575573 (-)
G495554 NA other downstream 1310716 30545402 ~ 30549450 (-)
LOC110525714 LOC106585251 other downstream 1332620 30526034 ~ 30527686 (-)
LOC110525784 LOC106585031 other upstream 815201 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 1462666 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 1467809 33332650 ~ 33336818 (-)
G498960 NA other upstream 2175518 34040359 ~ 34041174 (-)
G501142 NA other upstream 3900525 35765366 ~ 35767929 (-)

Expression


Co-expression Network