LOC110525803 (LOC106585048)


Basic Information

Item Value
gene id LOC110525803
gene name LOC106585048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33213385 ~ 33227655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606240.2
atTCCTTCCTACCTGTCTGAACAGGGAGCAGTGGGGCAGAGGAGAAAGGGTTGAAATaaagggagatgaggagagaaggagtAGGAACAAAGGACATAACAGGAAAGACGAGTGTGGACGAACGGAGGATTACAGAGGAGTAGAGGGTGCATAAGAGAAGCGTTCTGGCTGCGTGTGAAGAGGTTGCTCTGTTTTTGTCCTCTGTTGGAAAACATTTCCCCTATTGGTGTGGTGTTGGCTTGGTATGGATGCTATCATGCTGCAGGAGAAACTGGTGGAACGCTTGCTTTGCCCTCGAGTCAGAACCTCCAGGCAGAAGgAGAAGCAGTATGTGGGTTTTGCTACCCTCCCTAACCAGGTGCACAGGAAGTCAGTGAAAAAGGGATTTGACTTCACCCTCATGGTCGCCGGAGAGTCTGGTATGGGTAAATCTACTCTGGTCAACAGCCTGTTCCTCACAGACTTGTACAAGGACAGGAAACTTCTCAATGCTGAGGAGCGTatcaaccagacagtagagaTCATTAAGCATACAGTGGACATTGAGGAGAAAGGAGTGAAGCTGAAGCTGACCATTGTAGACACACCAGGCTTTGGAGACGCTGTCAACAACAATGAATGCTGGAAGCCCATCACAGACTACATTGACCAGCAGTTTGAGCAGTACTTCAGGGACGAGAGTGGACTGAACAGGAAGAACATCCAGGACAACAGAGTCCACTGCTGCCTCTACTTCATACCTCCATTTGGACATGGACTGCGTCCAGTAGATGTGGAGTTTATGAAGGCTCTCCATGAGAAGGTGAACGTGGTTCCTCTCATCGCCAAGGCTGACTGTCTCACTCCCAGCGAGATCAAGAAACTCAAAGACAGGgtccgTGATGAGATTGAGAGGTTTGGCATTAAGGTGTACCAGTTCCCAGAGTGTGACTCTGATGAGGACGAGGAGTTTAAACAACTGGACAAAGAACTGAAGGAGTGCTGTCCGTTTGCAGTGATTGGCAGTAACACTGTGGTTGAGGCCAGGGGccagagagtaagagggagactTTACCCATGGGGCATTGTGGAAGTGGAGAACCAGTCTCACTGTGACTTTGTGAAGCTGAGGAACATATTGATCCGCTCCCACATGCACGACCTCAAAGACGTGACCTGTGACATGCACTATGAGAACTACAGAGCGCAGTGTATACAGGAcatgaccagTAAACTGACGCAGGACAACCGAATGGAGAGCCCGATTCCCATGTTGCCCCTGCCCACCCCCGACGTGGAGACCGATAGACTCATCAAGATGAAAGATGAAGAGtTGGCGAGGATGCAGGATATGCTGAATAAGATGCAGCAGCAGATCCATGATGGGAAGGACCAGTGAGCCCCTCCCCCTGCAGACCCTGACTACAGCCCCACCTGCTGGCCAGCCACTGATTTACATCCACAACTTCAGATGAACAAATGCAAACAATACCATACATACCAACATGTTATTTACTGATATAAtcagcatgggggggggggggggggggcagttgctGTATATTCATTCATtggtcttttttttgtttttgtgtgtgtgtttttttttttttttggtctgtCCTGCAAGGAGAAATTTAGTTTTTTACTGAACCTGGTGTCCGTTTTGAACCCCATTTAATATTATGAACAGTCCTCCTAgcatatgtcataatataaacattttatttaaatgaCCTGTTAAATGTATCTAATTTATAAATATGCTGAATACTTTTGGGATATTCTGTCAGGTTATGAATACGCATAAGATATTTTGTAAAACGGCAATATTACTGATGTTAAGGTTTGAGTCTGTTGGTTTTGAGTGAGTGTGCCTGTGTGATTTGAGATGTATGACACTCTATTACGAGGAGCTTATTCTGCTTTGATACTGTGAGAATCTGTTTTCCCTTTCAGTGGCATTTCTTGTGCTTTTGGTACAGGCTTAATAATAGGCTACCTAAGAATCTAAACAAATGTAACGTATGACCTTTTTACTGCTGGTCTACTTCAACTTGTTGGGAagaccctttttttttttatttttatttttttaacaatgtCTTGGCGCTTGCAAGTCAGCTTGAGAATGTCTTCAGCGCCATTTGCTTACCTTACAGTGCATTGAGACCCTTTTGACTTACATAGCTAATGAAAGGGTAGGTTCGGTAAGTGGTGCATGTGCGCGAGCATGCCGACGTTACTCATAACTGCTTAGAGCTTAATTTCCACTCTCATATGATGCTATGTGTTTGTTCTTAAATGCATTTTGAGCTATGCCTCGGTACCACTATGTGACTGTAAAAATAGGCAAACTTTTAAGAGCAGCTACTGTATATGCTTTTGTCCAATATagcatatagtgtgtgtgtgtgtgtgtgtggtgtatgctgCCCTCTGGCTGTGTTGTTCAGGATGGTGTTTGGCTTTTTATAGTGCTTGTGCTCAGAAACCATGGTGGAACTAGTGACCCGTTTATGATGATGAATAAACCGTCTGGATTca
>XM_021606241.2
AAGCTGCTGTGGAGGTTGGTGTAGCAGTGTTGCTAAATGGTGAAAAGCTGATATCACAGAATGATGCATGGATAGGAAGCATGCCACAGTCTTATTCCCTTGTACTTGGTGCACGTCTAGATGTTGAAAAATTAAGATTTCAAACATATGAGTGAGAAGTTTGAACAGCATTAATTATGGAAGCTGCATACAATATTGATGATATGGACAAGTAAGATCATAGGAAACCTCTCCATCCACGATTGGGTACCACATAGATGAGGGCGGGGTTCTGCACGATATTGCAACACCCTCTCCCACAACCTGTCTGGCTGCTGTGGTAGCGCGGAGAAGGAACGGACGCGTGCGTTTACCGAGCAGTCCGTCCGTTCTGAAGCGACACCGAGGGGAGGAGAGCGGCGAAAATGACGACCAACATCCGATACAAGAGCCGTATCCCGATCAAATCGGACGAGACAGTTGAGgAGAAGCAGTATGTGGGTTTTGCTACCCTCCCTAACCAGGTGCACAGGAAGTCAGTGAAAAAGGGATTTGACTTCACCCTCATGGTCGCCGGAGAGTCTGGTATGGGTAAATCTACTCTGGTCAACAGCCTGTTCCTCACAGACTTGTACAAGGACAGGAAACTTCTCAATGCTGAGGAGCGTatcaaccagacagtagagaTCATTAAGCATACAGTGGACATTGAGGAGAAAGGAGTGAAGCTGAAGCTGACCATTGTAGACACACCAGGCTTTGGAGACGCTGTCAACAACAATGAATGCTGGAAGCCCATCACAGACTACATTGACCAGCAGTTTGAGCAGTACTTCAGGGACGAGAGTGGACTGAACAGGAAGAACATCCAGGACAACAGAGTCCACTGCTGCCTCTACTTCATACCTCCATTTGGACATGGACTGCGTCCAGTAGATGTGGAGTTTATGAAGGCTCTCCATGAGAAGGTGAACGTGGTTCCTCTCATCGCCAAGGCTGACTGTCTCACTCCCAGCGAGATCAAGAAACTCAAAGACAGGgtccgTGATGAGATTGAGAGGTTTGGCATTAAGGTGTACCAGTTCCCAGAGTGTGACTCTGATGAGGACGAGGAGTTTAAACAACTGGACAAAGAACTGAAGGAGTGCTGTCCGTTTGCAGTGATTGGCAGTAACACTGTGGTTGAGGCCAGGGGccagagagtaagagggagactTTACCCATGGGGCATTGTGGAAGTGGAGAACCAGTCTCACTGTGACTTTGTGAAGCTGAGGAACATATTGATCCGCTCCCACATGCACGACCTCAAAGACGTGACCTGTGACATGCACTATGAGAACTACAGAGCGCAGTGTATACAGGAcatgaccagTAAACTGACGCAGGACAACCGAATGGAGAGCCCGATTCCCATGTTGCCCCTGCCCACCCCCGACGTGGAGACCGATAGACTCATCAAGATGAAAGATGAAGAGtTGGCGAGGATGCAGGATATGCTGAATAAGATGCAGCAGCAGATCCATGATGGGAAGGACCAGTGAGCCCCTCCCCCTGCAGACCCTGACTACAGCCCCACCTGCTGGCCAGCCACTGATTTACATCCACAACTTCAGATGAACAAATGCAAACAATACCATACATACCAACATGTTATTTACTGATATAAtcagcatgggggggggggggggggggcagttgctGTATATTCATTCATtggtcttttttttgtttttgtgtgtgtgtttttttttttttttggtctgtCCTGCAAGGAGAAATTTAGTTTTTTACTGAACCTGGTGTCCGTTTTGAACCCCATTTAATATTATGAACAGTCCTCCTAgcatatgtcataatataaacattttatttaaatgaCCTGTTAAATGTATCTAATTTATAAATATGCTGAATACTTTTGGGATATTCTGTCAGGTTATGAATACGCATAAGATATTTTGTAAAACGGCAATATTACTGATGTTAAGGTTTGAGTCTGTTGGTTTTGAGTGAGTGTGCCTGTGTGATTTGAGATGTATGACACTCTATTACGAGGAGCTTATTCTGCTTTGATACTGTGAGAATCTGTTTTCCCTTTCAGTGGCATTTCTTGTGCTTTTGGTACAGGCTTAATAATAGGCTACCTAAGAATCTAAACAAATGTAACGTATGACCTTTTTACTGCTGGTCTACTTCAACTTGTTGGGAagaccctttttttttttatttttatttttttaacaatgtCTTGGCGCTTGCAAGTCAGCTTGAGAATGTCTTCAGCGCCATTTGCTTACCTTACAGTGCATTGAGACCCTTTTGACTTACATAGCTAATGAAAGGGTAGGTTCGGTAAGTGGTGCATGTGCGCGAGCATGCCGACGTTACTCATAACTGCTTAGAGCTTAATTTCCACTCTCATATGATGCTATGTGTTTGTTCTTAAATGCATTTTGAGCTATGCCTCGGTACCACTATGTGACTGTAAAAATAGGCAAACTTTTAAGAGCAGCTACTGTATATGCTTTTGTCCAATATagcatatagtgtgtgtgtgtgtgtgtgtggtgtatgctgCCCTCTGGCTGTGTTGTTCAGGATGGTGTTTGGCTTTTTATAGTGCTTGTGCTCAGAAACCATGGTGGAACTAGTGACCCGTTTATGATGATGAATAAACCGTCTGGATTca

Function

NR:

description
septin-5 isoform X2

GO: NA

KEGG:

id description
K04557 SEPT5, PNUTL1, CDCREL1; septin 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606240.2 False 2526 mRNA 0.45 11 33213385 33219643
XM_021606241.2 True 2671 mRNA 0.45 12 33213385 33227655

Neighbor

gene id symbol gene type direction distance location
LOC110525802 LOC106585047 coding downstream 2139 33201417 ~ 33211246 (-)
LOC118964861 NA coding downstream 7144 33205319 ~ 33206241 (-)
LOC118965075 NA coding downstream 13867 33198166 ~ 33199518 (-)
LOC118965074 NA coding downstream 15940 33193270 ~ 33197445 (-)
LOC110525800 ergi2 coding downstream 82713 33114696 ~ 33130672 (-)
LOC110525804 LOC106585049 coding upstream 158 33227813 ~ 33278199 (-)
LOC110526890 cdc45 coding upstream 71014 33298669 ~ 33313304 (-)
LOC110525810 NA coding upstream 92598 33320253 ~ 33321907 (-)
LOC110525812 LOC103397138 coding upstream 104997 33332650 ~ 33336818 (-)
LOC110525813 polb coding upstream 109348 33337003 ~ 33344085 (-)
G498452 NA non-coding downstream 3689 33209096 ~ 33209696 (-)
G498447 NA non-coding downstream 23987 33189122 ~ 33189398 (-)
G498334 NA non-coding downstream 190344 33014886 ~ 33023041 (-)
G498324 NA non-coding downstream 207749 33005435 ~ 33005636 (-)
G497708 NA non-coding downstream 268638 32944201 ~ 32944747 (-)
G498489 NA non-coding upstream 33722 33261377 ~ 33331621 (-)
G498493 NA non-coding upstream 38878 33266533 ~ 33266855 (-)
G498500 LOC106585050 non-coding upstream 51572 33279227 ~ 33280931 (-)
G498503 NA non-coding upstream 55927 33283582 ~ 33288837 (-)
LOC110525784 LOC106585031 other downstream 530538 32680037 ~ 32682899 (-)
G496851 NA other downstream 1320736 31843463 ~ 31892649 (-)
G496777 NA other downstream 1541458 31670978 ~ 31671927 (-)
G496772 NA other downstream 1551767 31661393 ~ 31661618 (-)
G495560 NA other downstream 2637812 30575118 ~ 30575573 (-)
G498484 rpl6 other upstream 99852 33327507 ~ 33330504 (-)
G498960 NA other upstream 812704 34040359 ~ 34041174 (-)
G501142 NA other upstream 2537711 35765366 ~ 35767929 (-)
hk2 LOC106585103 other upstream 3280401 36507843 ~ 36569143 (-)

Expression


Co-expression Network