LOC110525812 (LOC103397138)


Basic Information

Item Value
gene id LOC110525812
gene name LOC103397138
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33332650 ~ 33336818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606250.2
CCGTGTGCATAACGGTTAGCCAATAGGAGATATGTGCGATCGTGTCTTCTGTCAGTTACACACCCACATTACTTTTTGTCCACCACTTAGCGGGAGTTGTAGCTGTGAAATCAAGCGTCCATATAGCAGAGACAACCGGCGTTGGAAAATAAGGGCAACCATGTCTGACAGAAAAGCAGTCATAAAAAATGCCGACATGTCAGAGGAGATGCAGCAGGATGCAGTGGAGTGTGCCACGCAGGCTCTGGAGAAGTACAACATCGAGAAAGACATTGCCGCATACATCAAGAAGGAGTTTGACAAGAAGTACAACCCCACCTGGCATTGCATTGTAGGGAGGAACTTTGGCAGCTACGTGACCCATGAGACCAAGCATTTCATCTACTTCTACTTGGGCCAGGTGGCCATCCTGCTCTTCAAGTCTGGCTGAGGAGCCAGCCGCCCCAGCCCCTTTAACATCAACTGACCATTAAATATTGACTGACTCGACAGAAAGGCTCTTTCATTCCTGGTCAACGGGAACTGCCTTTCTGTGCTGCTTTCTACCATTTTGTTCCTCTTTGTTTAAAGAAAATACCTGGCCATGTGAGAGAAATGAAACACTTGTATTTATGTTTTCTATTGCAGTAGATTGTCACTAATTTGATTTTAAATTAAAGCGATATCGTTTGGCTTTC
>TU566347
ATCGTGTCTTCTGTCAGTTACACACCCACATTACTTTTTGTCCACCACTTAGCGGGAGTTGTAGCTGTGAAATCAAGCGTCCATATAGCAGAGACAACCGGCGTTGGAAAATAAGGGCAACCATGTCTGACAGAAAAGCAGTCATAAAAAATGCCGACATGTCAGAGGAGATGCAGCAGGATGCAGTGGAGTGTGCCACGCAGGCTCTGGAGAAGTACAACATCGAGAAAGACATTGCCGCATACATCAAGAAGGAGTTTGACAAGAAGTACAACCCCACCTGGCATTGCATTGTAGGGAGGAACTTTGGCAGCTACGTGACCCATGAGACCAAGCATTTCATCTACTTCTACTTGGGCCAGGTGGCCATCCTGCTCTTCAAGTCTGGCTGAGGAGCCAGCCGCCCCAGCCCCTTTAACATCAACTGACCATTAAATATTGACTGACTCGACAGAAAGGCTCTTTCATTCCTGGTCAACGGGAACTGCCTTTCTGTGCTGCTTTCTACCATTTTGTTCCTCTTTGTTTAAAGAAAATACCTGGCCATGTGAGAGAAATGAAACACTTGTATTTATGTTTTCTATTGCAGTAGATTGTCACTAATTTGATTTTAAATTAAAGCGATATCGTTTGGCTTTCTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606250.2 False 677 mRNA 0.45 3 33332652 33336818
TU566347 True 641 TUCP 0.45 3 33332650 33336780

Neighbor

gene id symbol gene type direction distance location
LOC110525810 NA coding downstream 10796 33320253 ~ 33321907 (-)
LOC110526890 cdc45 coding downstream 19348 33298669 ~ 33313304 (-)
LOC110525804 LOC106585049 coding downstream 54453 33227813 ~ 33278199 (-)
LOC110525803 LOC106585048 coding downstream 104997 33213385 ~ 33227655 (-)
LOC110525802 LOC106585047 coding downstream 121406 33201417 ~ 33211246 (-)
LOC110525813 polb coding upstream 185 33337003 ~ 33344085 (-)
LOC110526891 NA coding upstream 233187 33570005 ~ 33576547 (-)
LOC118965076 NA coding upstream 253038 33589856 ~ 33593095 (-)
si:ch211-127m7.2 LOC106585066 coding upstream 387800 33724618 ~ 33730221 (-)
LOC110525826 NA coding upstream 437241 33774059 ~ 33778109 (-)
G498489 NA non-coding downstream 1031 33261377 ~ 33331621 (-)
G498503 NA non-coding downstream 43815 33283582 ~ 33288837 (-)
G498500 LOC106585050 non-coding downstream 51721 33279227 ~ 33280931 (-)
G498516 NA non-coding upstream 11710 33348528 ~ 33348859 (-)
G498486 NA non-coding upstream 23032 33359850 ~ 33364334 (-)
G498520 NA non-coding upstream 32143 33368961 ~ 33369198 (-)
G498522 NA non-coding upstream 36917 33373735 ~ 33374130 (-)
G498535 NA non-coding upstream 53774 33390592 ~ 33390885 (-)
G498484 rpl6 other downstream 2148 33327507 ~ 33330504 (-)
LOC110525784 LOC106585031 other downstream 649805 32680037 ~ 32682899 (-)
G496851 NA other downstream 1440003 31843463 ~ 31892649 (-)
G496777 NA other downstream 1660725 31670978 ~ 31671927 (-)
G496772 NA other downstream 1671034 31661393 ~ 31661618 (-)
G498960 NA other upstream 703541 34040359 ~ 34041174 (-)
G501142 NA other upstream 2428548 35765366 ~ 35767929 (-)
hk2 LOC106585103 other upstream 3171238 36507843 ~ 36569143 (-)
vamp8 LOC106585118 other upstream 3713885 37050701 ~ 37065030 (-)
G503064 NA other upstream 3903026 37239844 ~ 37240937 (-)
LOC118964861 NA coding downstream 126409 33205319 ~ 33206241 (-)

Expression


Co-expression Network