LOC110525813 (polb)


Basic Information

Item Value
gene id LOC110525813
gene name polb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33337003 ~ 33344085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606251.2
CCACTTGGTGGCAGCAATACTAATTTGGGGGTTGTAGTCCGCGGTAAAACcatcagaagaagaagaagcagcagaAGAAAGGCAGTGTTAGCTACACTACTGGCAAGCACGTAAAATAAGAATACAATATAATTTTGGAAAAGCTTGAATACAGAGATGAGTAAAAGGAAAGCGCCACAGGAATCCCCAAACGAGGGAATAACAGACTTTCTTACCGAATTGGCCAACTATGAGAGGAATGTCAACAGAGCTATACACAAGTACAATGCCTACAGGAAAGCAGCTTCAGTGATCTCAAAGTACCCCCAGAAGATCAAAAATGGGGAAGAGGCCAAGAAACTGGATGGCGTTGGAAAAGAGATTGCTAAGAAGATCGATGAGTTTTTACAAACAGGAACACTTAAGAAGTTAGAAAAGATTCGTAATGATGACACCAGCTCCTCCATCAATTTCCTTACCAGAGTCACTGGTATTGGTCCTGCTGCTGCCAGAAAGTTCTTTGATGAGGGAGTGAAGACTCTGGAAGATCTGAAGAAAATCGAACACAAGCTCAATCATCATCAGCAGATTGGACTCAAGTACTTTGAGGAGTTTGAGAAGAGGATTCCACGATCTGAGATGACGAAgatggagACTCTCATTCTGCAGGAGCTGGAGTTGGTGGATACTGAGTACATTGGGACAATCTGTGGAAGCTACAGGAGAGGTGCTGAATCCAGTGGGGATATTGATATCTTACTGACCCACCCAAACTACACCTCTGTGGATGAGAAACAGCCCAAACTTCTCCATGCCGTGGTGGAGCATTTTGAATCCATTGGGTTCATTACAGACACTCTGTCCAAAGGAGACACCAAATACATGGGAGTCTGCCAGCTGCAGCAGAAGGATGAAGACGAGGAGGAATATCTTCACAGACGCATTGATATCAGGTTAATTCCTAAGGACCAGTATTACTGTGGTGTGCTGTATTTCACTGGCAGTGACATCTTCAATAAGAACATGAGAACTCACGCTCTGGAGAAAGGCTTCACCCTCAACGAGTATACCATCCGTCCAGTGGGGGTCACTGGTATGGCCGGGGAACCTCTGATGGTGGACAGTGAGAAGGATATCTTTGACTACATCCAATGGAAATACAGAGAGCCTAAAGAACGCAGCGAGTGAAAGGGATGAAAGACACTTTTTATCCCCACATGATTTAACTGCCAACAAGGCTGAAATTGTGTATGTTTGTTTTTATCTATGTGTCTTAGGGTTTCTTTTGATTTTGGTGTGTTTTTCCAGGAGGGAAAAATAGCACAACCTTGTTGGTCTTTTTTTAAGTTGTTCTGAGGTTTCTCCAACAGATTGACAGAACATGTATAGTTAAAATATACTTGCAAACACTCTAACTCTTGTGATATGCgtgatctgttttttttttttgacgaCATCACCAGAGATTTATACCCTCTGACAATGCCAAGACAGAATTATTTGTTTACATTGCTGTCACTCAGCAGAATCATCCAAATATATTTGTATTGTGCTAAAATAATTTGTGTATCGAACAGCAATGCAGTCTGTTACTGCTTTGTCACTATCTTGTTTGGCTAGCTAGGCAACAATGTTACCTTGACTGCAGAAACAGACTATCTACCAGGCTAAAGCATTGGGCTAGTGTTAGGACAATACCAGATCTTTTAGTATGCCTGACTAGTCACTGCTGTAGCATCTTTGTACATTGTTGTTTCCTTCACTCACTGTCAAGTTTTATATGTATTATGTCTGGGAGACATGTATCATGCTTTTGAGATGAAGTTACTTCCAAGATGAAGACACTTTGGAGTGATGAATGGATATTATGTTACATATTGTTCTGTCTTTTTAGAACCAGACGTACCCATGAGCAGTTGGAGTCCATTTTCTCTCTagatttttttaattaatttttatGGGTGGAAATGTAACACTGTAATTGAGCTCTATCCGCATGATTTCTAGGGAATAAATGGTGCACATAAACATGTCGAGATGGCCTGTAACTACCCTTATGGAAtctccccccgccccccccccccccaaaaaaaactgaaGATTTTCGAGAAAGGTGAATTGATACTGCTAGTTAACAGATAActatttattttgtgtttttatgAGTAATTAAAAAAAAGAAGTATTCTCTTTAA

Function

symbol description
polb Enables DNA-directed DNA polymerase activity. Predicted to be involved in base-excision repair and double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA biosynthetic process; DNA repair; and DNA replication. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human POLB (DNA polymerase beta).

NR:

description
DNA polymerase beta

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02330 POLB; DNA polymerase beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606251.2 True 2174 mRNA 0.41 14 33337003 33344085

Neighbor

gene id symbol gene type direction distance location
LOC110525812 LOC103397138 coding downstream 185 33332650 ~ 33336818 (-)
LOC110525810 NA coding downstream 15147 33320253 ~ 33321907 (-)
LOC110526890 cdc45 coding downstream 23699 33298669 ~ 33313304 (-)
LOC110525804 LOC106585049 coding downstream 58804 33227813 ~ 33278199 (-)
LOC110525803 LOC106585048 coding downstream 109348 33213385 ~ 33227655 (-)
LOC110526891 NA coding upstream 225920 33570005 ~ 33576547 (-)
LOC118965076 NA coding upstream 245771 33589856 ~ 33593095 (-)
si:ch211-127m7.2 LOC106585066 coding upstream 380533 33724618 ~ 33730221 (-)
LOC110525826 NA coding upstream 429974 33774059 ~ 33778109 (-)
LOC110525825 rasf2 coding upstream 434124 33778209 ~ 33792523 (-)
G498489 NA non-coding downstream 5382 33261377 ~ 33331621 (-)
G498503 NA non-coding downstream 48166 33283582 ~ 33288837 (-)
G498500 LOC106585050 non-coding downstream 56072 33279227 ~ 33280931 (-)
G498516 NA non-coding upstream 4443 33348528 ~ 33348859 (-)
G498486 NA non-coding upstream 15765 33359850 ~ 33364334 (-)
G498520 NA non-coding upstream 24876 33368961 ~ 33369198 (-)
G498522 NA non-coding upstream 29650 33373735 ~ 33374130 (-)
G498535 NA non-coding upstream 46507 33390592 ~ 33390885 (-)
G498484 rpl6 other downstream 6499 33327507 ~ 33330504 (-)
LOC110525784 LOC106585031 other downstream 654156 32680037 ~ 32682899 (-)
G496851 NA other downstream 1444354 31843463 ~ 31892649 (-)
G496777 NA other downstream 1665076 31670978 ~ 31671927 (-)
G498960 NA other upstream 696274 34040359 ~ 34041174 (-)
G501142 NA other upstream 2421281 35765366 ~ 35767929 (-)
hk2 LOC106585103 other upstream 3163971 36507843 ~ 36569143 (-)
vamp8 LOC106585118 other upstream 3706618 37050701 ~ 37065030 (-)
G503064 NA other upstream 3895759 37239844 ~ 37240937 (-)

Expression


Co-expression Network