LOC110525849 (dgcr8)


Basic Information

Item Value
gene id LOC110525849
gene name dgcr8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 35435376 ~ 35445771 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606308.2
TGTTGATTAGTGTGCCCACGTAGAACTAAATGGTGATTGGACTCTTCACCGCTCAATCGTCAAAATGCCGGTATTGGGGGTGGTGTTTCAGAAGAATCCTGCAGCTGTCTGCAAGATGGCGGAACGGGGAAGGGATCTGTCTGGCCTCGTTAAAAGAATAAAATAATTTAGGTTAGCTAGCTAAGGGAAGAACATTTTGTAAATGAAATATAGCTCTGACGGAGGATTTGCCAGTGGAGGAGTCGCAGTGCCTAGAACCCGAGTAATATAAGCTGAATGCATTGTGATTTCCAGTAATTGAGACAGTGATTCTAAAAAGCTGTCTACATTAATGAAAAGAACAATGTAGTCAGCTTAGCATATTCAACACTGGTACATGATCAACACAGGGAAGTTGTTTTGTTCGAAATCTTGTGCAATGTGCTTCTGCATGCATTTTAGCTAAATACTTATAAGAACAGGTTGAAAAAACAGTCAGGGTGACCCATAGAGAATTTGTTGTATTTAGTGATTCATAAGACAGTCAACATGGAGATAGATGACATATTACCCCCATTGCCTTTGGAGCCACCTGATGATTTAAACTCAGAGGGCCTTAATGGTAAAGCGCAGCCTCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGAAATGGACGTTAGCTCtggtggtgatggacagacacacaccccaGCAGGGGACCAGGGCCTGGGGCTCCTCGCCAAGGGCTCCATAACCTTCAGTAATAACCTGTCAGATGAGGTCGAACCCAGCTCACTGTGCCCTAGAACAGCCCGCCATGCACCCCCTGTCAGCAAGTTCCTACCAGAGCTTAAGTTACTACAAGACATTAAGATCAGTGTCAGCGTTGTAGATAGCAGCAGGAGCAAAGATAGGAAGGTGCTGTACACAGGGATCGGTCAGGAGGGTGGTGGTGTAGGGGAGACCAGCTCAGAGGGCCTTAATGGTGAGTTGTATGATGCCAATACAGAGCTAGGAGCTGTTGAGGGTGGCTCAGGACTGGGGAACGGGATGGTCTGTGGcagtgcagggaggagaggggaagaggcagACCTGGAGAACAAAGTGGAATTTGCGGTCTTGGACGAGCTGGAGGACTTCAGTCAGGACTTCCTGGATACGGAGAATGTGGAGCAGGGGGGTTTCAGGTCTGAGGAAATGGTTCAACCGGAGAATGCTGACGAGGAGAACCTGAATTACTCATATGAGGAGGACTTCGACAATGATGTAGACGCTCTGCTGGAGGAGGGCATGCCCGTGCCCAAAAAGATGCGCCTGGCGGAGGGGGCTGCTGAGTATGCAGGGGACAGTGACCACGCGTCGGACGGGGAGGGAGGCGTTCAGCCCATGATGACCAAAATTAAAACAGTCCTGAAGAGTCGTGGGCGTCCACCCACTGAGCCACTACCTGATGGATGGATCATGACATTCCATAACTCTGGCATTCCAGTCTACCTGCACAGAGAGACCAGAGTAGTGACCTGGTCCAGACCTTACTTCCTGGGGACCGGGAGCATCAGGAAACACGACCCTCCCACCAGTAGCATCCCCTGCTTGCACTATAGGAAGATGAAGGATCATGAGGAAAGGCAACAGAACGGAGAGGTGACACCCAACGCTGAGGTGTCTCCAGTGAAGCCTGGGGAAGAGGCAGACTCCCTGGAGAGACCAGACGAGCCTGACTCCACAGCCCAGGAGGACCCTACCACTGTGGCCCTTGGTCTGACCCtgggggatggagaggtggagttGGAGACAGGCCTGGTCATAGAAGGAACCATAGAAAGGTGTCCTGTCCCGCACGGCAAGATGGCCCAGGGGGCTCTGGGACAGGTCAGGGCCAAGGTGGAGGTGTGTAAAGATGAATCCATAGAAATTGAGGAGTTCCGCAGCTACCTGGAGAAGTGCTTTGACTTTGAACAAGTGACTGTGAAGAAGTTCCGTACCTGGGCAGAGCGCAGGCAGTTCAACAGGGACATGAAGAGGAAGCAGGCTGAGTCCGAGAGACCCATTCTGCCTGCCAACCAGAAGCTCATCACTCTGTCTGTATCAGATACCCCCACCAAGAAAGAGTTTGTCATTAATCCAAATGGGAAGTCTGAAGTTTGCATCCTACATGAATATATGCAACGTGTCCTGAAGGTCCGACCTGTTTACAACTTTTTTGAATGTGAGAACCCAAGTGAACCCTTTGGCGCCTCCGTCATTATAGACGGAGTGACATATGGCACAGGAACTGCAAGCAGTAAAAAACTTGCCAAGAATAAAGCTGCTCGAGCCACACTGGAGATCCTCATCCCTGACTTTGTAAAGCAGACATCTGAGGAGAAGCTTGTAGAAGGGGATGAACTGGAGGTATCAGCCTGCCAATCATTGTATTTTAATCATATCAGTATTGAAGATTCTAGGGTGTACGAACTGACCAATAAAGCAGGCTTACTCTCGCCATATCAGATTCTACACGAGTGCCTTAAGAGAAACCATGGAATGGGTGACACCAGCATCAAGTTTGAGGTGATCCCAGGGAAGAACCAGAAGAGTGAATATGTGATGACGTGTGGAAAGCACACTGTGCGTGGATGGTGCAAGAATAAGCGTGTGGGGAAGCAGCTGGCGTCGCAGAAGATCCTACAGATGCTGCACCCCCACGTAAAGAACTGGGGGTCACTGCTCCGCATGTACGGCAGAGAGAGCAGTAAGATGGTGAAGAAGgAAAATTCAGACAAGAGTGTGATTGAACTTCAACAGTATGCCAAAAAGAACAGGCCAAATCTTCACATCCTGAACAAACTGCAAGAAGAGATGAAGAAACTGGCTAAAGAGAGGGCGGAAACCAGGAAGAAGCCCAAGATGACCATAATGGAGTCGGCCCAGCCTGGCAGTCAGCCGCTCTGTACTGTTGACGTCTAGGAACTATCACTGCAACCAACCTAACATGGCACTGACCAATGGTAGCCATAGTCACTGTCAGATAAAAAGTCGCGCCACCAATCTATCATCCAATTATGCATCATTGTGTAAGGGCAATACAACACATTTATACTATAAAGGTGGTCATCTTAGCACTGTTTCTCCAAGCTGTTTGttatttgaccccccccccccccccgttcattGTTAGTGGCTTGGGTAAGAATAGTACAAATGCACTAACTGACAGTAGAGTGAGCACCATCTACCTCTTGATGCAATCTCTACGCAGCAGCGCTTCTATAAATTGAACCACAGGGGTGCAGACAGACCGGTTGAGATGACTTGACATGTCTATGAACCACAGCAATTTCTGTCAGCCTGTTTACTCTGTAGTAATGACTGCTGAAAATCACTAGCCCCCCGTGTTTTATAGTTGCGATTTAATTTCTAATACACTCCATACTTTTAGGACACTGAACATTTCGAGCAGGTTTCCTTATATGCTTAAAGCATAGCCTATTCAAAGGGATTTGTTTGCGGTCTCTGCTTTTGCTATTCTGGTACGTTGTGGAAAACCAATTTATATGCTGTTGTAATTTGGATATTGTTGATGTGTATAATTTGGATGGTGATTAGGGTCTCTGAGTATGCTTCGTCTAAAGAATGACAAGCTTACGTTTTCATTTGCACGTGAAACATTTACCTGATAAGAAGACACAAATGAAGTTTTCTGCACAACTCCAGTGAGTCCAGTCATACTTCTTGTTACATGCTCATGTTCTTAGTATGAGAAATGCATTTTGAATTTATAATGGAATGGACATTAAGAGGGACTAATAATTTGAGTTGCCTTTGTTCTGGATATACAGGATGAAACATATCAATGGACAGCTGATAAGGCTGGTCTGTCTAGCTAAGATCTTGTTTCCACATTAGCAGTGCAGACAACAAGCACAAGGGCTTGAAGTACTGTAGTCATTGAGGAAATATACAAGGTAAAGTTGTTACATATTTAAGGCGGCCTATACTTTTGGACTTTTCTTTCTGTAATTAGATTTTAGCCacttcattattttttattttttttgactAATTAAAGCAAAACAATACAACATGCAGACTTATTATTTAGCCATTCATTTAAGGACCCATATACAGATGGGAGAACAATTGGCTACATGTTGCCTTAGTTGACCCATTCCATGAAGGGCTCCCATCCCAGAGAACTCACAGGGCCCAAGTCCCCCTTCAAGGGAAATGGATTGACCAAGCCCCTCCTGATACAGCATTTGTTTAGCCAGTTAAGATGTGTCATAATGCGACAAGACATTAATATTGATGTTCTGGAAGAATTGCCTTTAGCATGTACAGATTTTTAATTAAGAGTTGTTTTAATGGTTTGGTCGTCTATAACAAGGTTTGTTTgccattattgtgtgtgtgtgttctgatcaaTCACGTTTTCAAGCATTGTGTAGGATAACTACGATCCTCTGCATAAGGCAATCTTCGGAAATTAAGTTGGCACACTTTACCTCGAACAAAATACGATCATGTCATTTATAATTAAATCCGATAGCTAAAGAAGCAGTGTGAACCAAAGCTTAAATACAGTCTTATGCATTTTTATAGAATACTGTAGGTTGCTGCATACAATACTTAAATATAAATATTACACACAGGAAAGGATAAAGATGCAATACCTGCTGGAACAAAATATAAACTGATGTGCATTCATTGTGTGGCATTCGGTTTGTGCGCTTTTCCTGAATGTTTAATGCAGCTGATCAGAATTCACCATTGTACACGGGCACAATGCTGTTGTATTGAatgacccccacacacacacacctcatatttGCGTGTTCTGTCTTGCCAAGTGTTAGTGTGTAAAGAAAATATGCCTTTTACACTTTTTAGAGTTGTAACAAGTTGTTTGCTAGAGATATTGCTGCCTAGAAAATGAAGTATGTAACAGCGACTTGGGATCGCTGACTTTCAGTGAAATTGGTTTATGCAAATAAAATCGTCATGACTTA
>XM_021606309.2
TGTTGATTAGTGTGCCCACGTAGAACTAAATGGTGATTGGACTCTTCACCGCTCAATCGTCAAAATGCCGGTATTGGGGGTGGTGTTTCAGAAGAATCCTGCAGCTGTCTGCAAGATGGCGGAACGGGGAAGGGATCTGTCTGGCCTCGTTAAAAGAATAAAATAATTTAGGTTAGCTAGCTAAGGGAAGAACATTTTGTAAATGAAATATAGCTCTGACGGAGGATTTGCCAGTGGAGGAGTCGCAGTGCCTAGAACCCGAGTAATATAAGCTGAATGCATTGTGATTTCCAGTAATTGAGACAGTGATTCTAAAAAGCTGTCTACATTAATGAAAAGAACAATGTAGTCAGCTTAGCATATTCAACACTGGTACATGATCAACACAGGGAAGTTGTTTTGTTCGAAATCTTGTGCAATGTGCTTCTGCATGCATTTTAGCTAAATACTTATAAGAACAGGTTGAAAAAACAGTCAGGGTGACCCATAGAGAATTTGTTGTATTTAGTGATTCATAAGACAGTCAACATGGAGATAGATGACATATTACCCCCATTGCCTTTGGAGCCACCTGATGATTTAAACTCAGAGGGCCTTAATGGTAAAGCGCAGCCTCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGAAATGGACGTTAGCTCtggtggtgatggacagacacacaccccaGCAGGGGACCAGGGCCTGGGGCTCCTCGCCAAGGGCTCCATAACCTTCAGTAATAACCTGTCAGATGAGGTCGAACCCAGCTCACTGTGCCCTAGAACAGCCCGCCATGCACCCCCTGTCAGCAAGTTCCTACCAGAGCTTAAGTTACTACAAGACATTAAGATCAGTGTCAGCGTTGTAGATAGCAGCAGGAGCAAAGATAGGAAGGTGCTGTACACAGGGATCGGTCAGGAGGGTGGTGGTGTAGGGGAGACCAGCTCAGAGGGCCTTAATGGTGAGTTGTATGATGCCAATACAGAGCTAGGAGCTGTTGAGGGTGGCTCAGGACTGGGGAACGGGATGGTCTGTGGcagtgcagggaggagaggggaagaggcagACCTGGAGAACAAAGTGGAATTTGCGGTCTTGGACGAGCTGGAGGACTTCAGTCAGGACTTCCTGGATACGGAGAATGTGGAGCAGGGGGGTTTCAGGTCTGAGGAAATGGTTCAACCGGAGAATGCTGACGAGGAGAACCTGAATTACTCATATGAGGAGGACTTCGACAATGATGTAGACGCTCTGCTGGAGGAGGGCATGCCCGTGCCCAAAAAGATGCGCCTGGCGGAGGGGGCTGCTGAGTATGCAGGGGACAGTGACCACGCGTCGGACGGGGAGGGAGGCGTTCAGCCCATGATGACCAAAATTAAAACAGTCCTGAAGAGTCGTGGGCGTCCACCCACTGAGCCACTACCTGATGGATGGATCATGACATTCCATAACTCTGGCATTCCAGTCTACCTGCACAGAGAGACCAGAGTAGTGACCTGGTCCAGACCTTACTTCCTGGGGACCGGGAGCATCAGGAAACACGACCCTCCCACCAGTAGCATCCCCTGCTTGCACTATAGGAAGATGAAGGATCATGAGGAAAGGCAACAGAACGGAGAGGTGACACCCAACGCTGAGGTGTCTCCAGTGAAGCCTGGGGAAGAGGCAGACTCCCTGGAGAGACCAGACGAGCCTGACTCCACAGCCCAGGAGGACCCTACCACTGTGGCCCTTGGTCTGACCCtgggggatggagaggtggagttGGAGACAGGCCTGGTCATAGAAGGAACCATAGAAAGGTGTCCTGTCCCGCACGGCAAGATGGCCCAGGGGGCTCTGGGACAGGTCAGGGCCAAGGTGGAGGTGTGTAAAGATGAATCCATAGAAATTGAGGAGTTCCGCAGCTACCTGGAGAAGTGCTTTGACTTTGAACAAGTGACTGTGAAGAAGTTCCGTACCTGGGCAGAGCGCAGGCAGTTCAACAGGGACATGAAGAGGAAGCAGGCTGAGTCCGAGAGACCCATTCTGCCTGCCAACCAGAAGCTCATCACTCTGTCTGTATCAGATACCCCCACCAAGAAAGAGTTTGTCATTAATCCAAATGGGAAGTCTGAAGTTTGCATCCTACATGAATATATGCAACGTGTCCTGAAGGTCCGACCTGTTTACAACTTTTTTGAATGTGAGAACCCAAGTGAACCCTTTGGCGCCTCCGTCATTATAGACGGAGTGACATATGGCACAGGAACTGCAAGCAGTAAAAAACTTGCCAAGAATAAAGCTGCTCGAGCCACACTGGAGATCCTCATCCCTGACTTTGTAAAGCAGACATCTGAGGAGAAGCTTGTAGAAGGGGATGAACTGGAGTATTTTAATCATATCAGTATTGAAGATTCTAGGGTGTACGAACTGACCAATAAAGCAGGCTTACTCTCGCCATATCAGATTCTACACGAGTGCCTTAAGAGAAACCATGGAATGGGTGACACCAGCATCAAGTTTGAGGTGATCCCAGGGAAGAACCAGAAGAGTGAATATGTGATGACGTGTGGAAAGCACACTGTGCGTGGATGGTGCAAGAATAAGCGTGTGGGGAAGCAGCTGGCGTCGCAGAAGATCCTACAGATGCTGCACCCCCACGTAAAGAACTGGGGGTCACTGCTCCGCATGTACGGCAGAGAGAGCAGTAAGATGGTGAAGAAGgAAAATTCAGACAAGAGTGTGATTGAACTTCAACAGTATGCCAAAAAGAACAGGCCAAATCTTCACATCCTGAACAAACTGCAAGAAGAGATGAAGAAACTGGCTAAAGAGAGGGCGGAAACCAGGAAGAAGCCCAAGATGACCATAATGGAGTCGGCCCAGCCTGGCAGTCAGCCGCTCTGTACTGTTGACGTCTAGGAACTATCACTGCAACCAACCTAACATGGCACTGACCAATGGTAGCCATAGTCACTGTCAGATAAAAAGTCGCGCCACCAATCTATCATCCAATTATGCATCATTGTGTAAGGGCAATACAACACATTTATACTATAAAGGTGGTCATCTTAGCACTGTTTCTCCAAGCTGTTTGttatttgaccccccccccccccccgttcattGTTAGTGGCTTGGGTAAGAATAGTACAAATGCACTAACTGACAGTAGAGTGAGCACCATCTACCTCTTGATGCAATCTCTACGCAGCAGCGCTTCTATAAATTGAACCACAGGGGTGCAGACAGACCGGTTGAGATGACTTGACATGTCTATGAACCACAGCAATTTCTGTCAGCCTGTTTACTCTGTAGTAATGACTGCTGAAAATCACTAGCCCCCCGTGTTTTATAGTTGCGATTTAATTTCTAATACACTCCATACTTTTAGGACACTGAACATTTCGAGCAGGTTTCCTTATATGCTTAAAGCATAGCCTATTCAAAGGGATTTGTTTGCGGTCTCTGCTTTTGCTATTCTGGTACGTTGTGGAAAACCAATTTATATGCTGTTGTAATTTGGATATTGTTGATGTGTATAATTTGGATGGTGATTAGGGTCTCTGAGTATGCTTCGTCTAAAGAATGACAAGCTTACGTTTTCATTTGCACGTGAAACATTTACCTGATAAGAAGACACAAATGAAGTTTTCTGCACAACTCCAGTGAGTCCAGTCATACTTCTTGTTACATGCTCATGTTCTTAGTATGAGAAATGCATTTTGAATTTATAATGGAATGGACATTAAGAGGGACTAATAATTTGAGTTGCCTTTGTTCTGGATATACAGGATGAAACATATCAATGGACAGCTGATAAGGCTGGTCTGTCTAGCTAAGATCTTGTTTCCACATTAGCAGTGCAGACAACAAGCACAAGGGCTTGAAGTACTGTAGTCATTGAGGAAATATACAAGGTAAAGTTGTTACATATTTAAGGCGGCCTATACTTTTGGACTTTTCTTTCTGTAATTAGATTTTAGCCacttcattattttttattttttttgactAATTAAAGCAAAACAATACAACATGCAGACTTATTATTTAGCCATTCATTTAAGGACCCATATACAGATGGGAGAACAATTGGCTACATGTTGCCTTAGTTGACCCATTCCATGAAGGGCTCCCATCCCAGAGAACTCACAGGGCCCAAGTCCCCCTTCAAGGGAAATGGATTGACCAAGCCCCTCCTGATACAGCATTTGTTTAGCCAGTTAAGATGTGTCATAATGCGACAAGACATTAATATTGATGTTCTGGAAGAATTGCCTTTAGCATGTACAGATTTTTAATTAAGAGTTGTTTTAATGGTTTGGTCGTCTATAACAAGGTTTGTTTgccattattgtgtgtgtgtgttctgatcaaTCACGTTTTCAAGCATTGTGTAGGATAACTACGATCCTCTGCATAAGGCAATCTTCGGAAATTAAGTTGGCACACTTTACCTCGAACAAAATACGATCATGTCATTTATAATTAAATCCGATAGCTAAAGAAGCAGTGTGAACCAAAGCTTAAATACAGTCTTATGCATTTTTATAGAATACTGTAGGTTGCTGCATACAATACTTAAATATAAATATTACACACAGGAAAGGATAAAGATGCAATACCTGCTGGAACAAAATATAAACTGATGTGCATTCATTGTGTGGCATTCGGTTTGTGCGCTTTTCCTGAATGTTTAATGCAGCTGATCAGAATTCACCATTGTACACGGGCACAATGCTGTTGTATTGAatgacccccacacacacacacctcatatttGCGTGTTCTGTCTTGCCAAGTGTTAGTGTGTAAAGAAAATATGCCTTTTACACTTTTTAGAGTTGTAACAAGTTGTTTGCTAGAGATATTGCTGCCTAGAAAATGAAGTATGTAACAGCGACTTGGGATCGCTGACTTTCAGTGAAATTGGTTTATGCAAATAAAATCGTCATGACTTA

Function

symbol description
dgcr8 Predicted to enable double-stranded RNA binding activity and primary miRNA binding activity. Predicted to be involved in primary miRNA processing. Predicted to be part of microprocessor complex. Orthologous to human DGCR8 (DGCR8 microprocessor complex subunit).

NR:

description
microprocessor complex subunit DGCR8 isoform X2

GO: NA

KEGG:

id description
K18419 DCGR8; microprocessor complex subunit DGCR8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606308.2 False 4976 mRNA 0.45 14 35435376 35445771
XM_021606309.2 True 4955 mRNA 0.45 14 35435376 35445771

Neighbor

gene id symbol gene type direction distance location
LOC110525850 ranbp1 coding downstream 5959 35423379 ~ 35429417 (-)
LOC118965124 NA coding downstream 10039 35425208 ~ 35425337 (-)
LOC110525847 LOC106585088 coding downstream 107720 35319218 ~ 35327656 (-)
LOC110525844 LOC106585085 coding downstream 150538 35253989 ~ 35284838 (-)
LOC110525838 LOC106585080 coding downstream 802479 34543412 ~ 34632897 (-)
LOC110525851 LOC106580470 coding upstream 2953 35448724 ~ 35502463 (-)
LOC110525855 LOC106585096 coding upstream 375746 35821517 ~ 35831139 (-)
LOC118965023 NA coding upstream 510728 35956499 ~ 35960296 (-)
hk2 LOC106585103 coding upstream 1062072 36507843 ~ 36569143 (-)
LOC110525871 LOC106585111 coding upstream 1295045 36740816 ~ 36746535 (-)
G500940 NA non-coding downstream 1937 35433130 ~ 35433439 (-)
G500939 NA non-coding downstream 2559 35432481 ~ 35432817 (-)
G500938 NA non-coding downstream 4108 35430963 ~ 35431268 (-)
G500877 NA non-coding downstream 14421 35420569 ~ 35420955 (-)
G500876 NA non-coding downstream 18591 35416301 ~ 35416785 (-)
G501089 NA non-coding upstream 243715 35689486 ~ 35689718 (-)
G501072 NA non-coding upstream 293272 35739043 ~ 35742828 (-)
G501137 txnrd2 non-coding upstream 314570 35760341 ~ 35764145 (-)
G501221 NA non-coding upstream 332415 35778186 ~ 35778465 (-)
G501223 NA non-coding upstream 335442 35781213 ~ 35781561 (-)
G498960 NA other downstream 1394202 34040359 ~ 34041174 (-)
LOC110525812 LOC103397138 other downstream 2098596 33332650 ~ 33336818 (-)
G498484 rpl6 other downstream 2104872 33327507 ~ 33330504 (-)
LOC110525784 LOC106585031 other downstream 2752529 32680037 ~ 32682899 (-)
G496851 NA other downstream 3542727 31843463 ~ 31892649 (-)
G501142 NA other upstream 319595 35765366 ~ 35767929 (-)
vamp8 LOC106585118 other upstream 1604932 37050701 ~ 37065030 (-)
G503064 NA other upstream 1794073 37239844 ~ 37240937 (-)
G503159 LOC106580514 other upstream 1885713 37331484 ~ 37336552 (-)

Expression


Co-expression Network