LOC110515628 (LOC106584960)


Basic Information

Item Value
gene id LOC110515628
gene name LOC106584960
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40269290 ~ 40272441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980102.1
ATGAGTAACAATACTGTGACCGGGAGGACCATGGTCCCGACTATACCTTCCATCATGTTTATTTTCGGAGTGGTGGGAAATGTAATCGCCATCGTGGTGCTCTGCAAGTCCAGGAAAGAGCAGAAGGAGACCACGTTCTACACGCTGGTTTGCGGTCTGGCAGTTACGGACCTTTTGGGGACCCTCCTGGCCAGTCCAGTCACCATCGCCACTTATGTGAAAGGATCTTGGCCAGGCGGGGACCCACTCTGCCAGTATTTCGgattcatcctcctcttcttctctttagCGGGGCTCAGCATCATATGCGCAATGTCCGTAGAGAGATACTTGGCGATAAACCATGCGTATTTCTACAACGACTATGTGGATCAGAGACTGGCGGGGTTGACTCTTCTGGCTATCTACATCTCCAATGCGCTTTTCTGCGCTATGCCTAGTATGGGTCTGGGACAAGTCAAAAAGCAGTACCCACAAACCTGGTGCTTCATAGAGTGGCGGAGCAACGTGAGTACTGATGCCACATTTTCTTACATCTACGCGGGATCAAGTTCGATTCTAATTCTGGCCACGGTGATCTGTAACGTTCTGGTGTGCGGGGCTTTGATCCGGATGCACCGGCAGTTCGTTCGGAGGATGTCGTTGGGGACAGACCCAGGGCGAAACACAGACCCAAGAAGGAGACGCAACTTCGGGAATCTGGCCGGCGCGGAGATCCAGATGGTGATTGTACTCATATGCACCTCAGCGGTGGTGCTCATATGCTCCATTCCACTAGTTGTGCAGGTGTTTCTGAACCAGCTGTATAAGACTCCGGTGGAGCTGAGACTGGAAAAGAACCCAGATCTGCGGGCGATCCGCTTCGCTTCCTTCAACCCCATCCTGGACCCCTGGATCTACATCCTCCTCCGCAAGGCCATGCTCCTCAAGCTCATTGAGCAGATCAAATGTCTGTTCTGTCAGATAGGAGCACGGCGGCAGCAGAGACAGAACTGCCACCAGTGCCCCTCCATCATCTCCTCTCGAGAGTCACCCTCACTGGTATCCCGTGAGCTGAGGGAGGTGTCCAGCACCTCTCAGACTGTTCTCTACCTGCCCGAAGGAAGTGAGACGTACACAGGAAGCTGTCATCACACAGGAGAGCAGTTTGGGTTCCGCACTTCCTCTGTCCAAAACCCCCGAAGTTCTTATTCATCAGGGCAGAGCAATACAGAGGACGGGAGCAGAGAAACGACACATCTAACCAGGGACCTTTCTGGTGTGGCAGGAAAGACCACTCAGTCATGTGTGAAAGACCAGGCTCTTCATGTGTCGCTAAGCAATGAGACAGTACAGGAGAAATGCATATAAGTCTTGTTTATTTGGATTCCCAGAAGCGGTTACTTTCTCAACAGCTACTCTAGTACTCCTCAGTCCTCATATTATTGTGAGGTTTCTGTGAGTCAGAGGGATGCCACACTTACATTGAAGGGACTGTCTTCAGACTGTCCAAGATGCCTTCTCTGAGGTAGACAGCTTCTGCTCTCCTAAGGGACTTATTTGGTTGGTGGAAGTGTTAGTAAAAGCAGAAATAAACTGGCACCAAGGCTGACTCATttgacattctctcaagatgAGGTATGGCACATTTAAACAACGTTAAGAAGCTTTTGGGAAGCTAGGTAGAGGGAGGAAGAAGTAAAAACAACAGAGACAcaactgagagggagagagaggatgtctGCTCTGCTTTGATGTCAAGCTACCTTGACCAGAAACATcaatgtttgtttattttccaGTCTTCTTGCACTGGTCAGGGAGCAAGATTGTCTCCATGGCTTAAAGGCCCATGACTGTACACTGTAGCTCAACAGTTTAATCACTAGCTTCTTTCAATCATTGAGTAAACTTTGTATTTAGAGCCGAGGTTGCCAGTAAACAAAAATTATTCCGATGTACATAAGCGTTATTAAGATTAATTGAAGGGAATGTAGCATGGGGCCTGAAGTAACGTGCCATGATTGCCAGCACCAAGGAAAAATCCGTTCTCACAAATACCTTTGTCTTGAGAAGCTTTGCTGTCTAGAGAGAAACATTGAGACTGTTTTGCATCACAGAATAGATTTAGAGAGTTTATAGGGCAGTAATATGTGTGTAATAAACATTATCCATGTGTTTGTCCTTCAGGTGAGAAGTATGACAAATTATCCAATTAGAATGCTTTTTAGAATGCCTTTGTCATGGAATGAGTTGTGCCAACATGCAGGATAGTTAGCCAAACACAGATTCTCAGTGACCCACCGCAATATTGTCATTGTCATAATTTTGTGACCTATGCAATTTCTTCTCTGTGAGAAGATGCAAGTTATTAAACGTGTCATGAAATGTTACATCAGTATAACATAAATATGGCATATCAGTTTTAAAATATGATGGTCCGGTATATCTGTAAAAGGCTTAAAATTACAGAGGTTTTTCATTATAAATTCACTGTGCTTGCGTTATATCCACCCTATAGAATATTCATGTAAGCAATACGTTCTGAAAAGGAATAAAATGGATTAACAGTTATTGAG
>TU575523
GGAAGTGTTAGTAAAAGCAGAAATAAACTGGCACCAAGGCTGACTCATttgacattctctcaagatgAGGTATGGCACATTTAAACAACGTTAAGAAGCTTTTGGGAAGCTAGGTAGAGGGAGGAAGAAGTAAAAACAACAGAGACAcaactgagagggagagagaggatgtctGCTCTGCTTTGATGTCAAGCTACCTTGACCAGAAACATcaatgtttgtttattttccaGTCTTCTTGCACTGGTCAGGGAGCAAGATTGTCTCCATGGCTTAAAGGCCCATGACTGTACACTGTAGCTCAACAGTTTAATCACTAGCTTCTTTCAATCATTGAGTAAACTTTGTATTTAGAGCCGAGGTTGCCAGTAAACAAAAATTATTCCGATGTACATAAGCGTTATTAAGATTAATTGAAGGGAATGTAGCATGGGGCCTGAAGTAACGTGCCATGATTGCCAGCACCAAGGAAAAATCCGTTCTCACAAATACCTTTGTCTTGAGAAGCTTTGCTGTCTAGAGAGAAACATTGAGACTGTTTTGCATCACAGAATAGATTTAGAGAGTTTATAGGGCAGTAATATGTGTGTAATAAACATTATCCATGTGTTTGTCCTTCAGGTGAGAAGTATGACAAATTATCCAATTAGAATGCTTTTTAGAATGCCTTTGTCATGGAATGAGTTGTGCCAACATGCAGGATAGTTAGCCAAACACAGATTCTCAGTGACCCACCGCAATATTGTCATTGTCATAATTTTGTGACCTATGCAATTTCTTCTCTGTGAGAAGATGCAAGTTATTAAACGTGTCATGAAATGTTACATCAGTATAACATAAATATGGCATATCAGTTTTAAAATATGATGGTCCGGTATATCTGTAAAAGGCTTAAAATTACAGAGGTTTTTCATTATAAATTCACTGTGCTTGCGTTATATCCACCCTATAGAATATTCATGTAAGCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980102.1 False 2558 mRNA 0.46 2 40269290 40272441
TU575523 True 970 lncRNA 0.38 1 40269330 40270299

Neighbor

gene id symbol gene type direction distance location
LOC110525948 LOC106585177 coding downstream 12211 40216155 ~ 40257079 (-)
LOC110525946 atp5a1 coding downstream 64304 40194565 ~ 40204986 (-)
LOC110525941 LOC106585172 coding downstream 130087 40136197 ~ 40139203 (-)
LOC110525940 LOC106585171 coding downstream 136898 40056011 ~ 40132392 (-)
star star coding downstream 228691 40036206 ~ 40040599 (-)
mrps27 mrps27 coding upstream 9190 40281631 ~ 40287046 (-)
LOC110525952 LOC106585180 coding upstream 21519 40293960 ~ 40303383 (-)
LOC110525954 fabpl coding upstream 108742 40381183 ~ 40383687 (-)
LOC110519741 fabpl coding upstream 124797 40397238 ~ 40399864 (-)
LOC118964867 fabpl coding upstream 135592 40408033 ~ 40410285 (-)
G506945 NA non-coding downstream 1337 40267744 ~ 40267953 (-)
G506921 NA non-coding downstream 9761 40259329 ~ 40259529 (-)
G506915 NA non-coding downstream 85182 40183674 ~ 40184108 (-)
G506914 NA non-coding downstream 85962 40183051 ~ 40183328 (-)
G506910 NA non-coding downstream 91863 40177217 ~ 40177427 (-)
G506949 NA non-coding upstream 1482 40273923 ~ 40274246 (-)
G506951 NA non-coding upstream 2620 40275061 ~ 40275325 (-)
G506955 NA non-coding upstream 16089 40288530 ~ 40288745 (-)
G506970 NA non-coding upstream 41804 40314245 ~ 40353238 (-)
G506785 NA other downstream 379359 39887022 ~ 39889931 (-)
LOC110525932 LOC106585164 other downstream 431130 39826260 ~ 39877951 (-)
LOC110525929 LOC106585162 other downstream 504514 39751726 ~ 39778538 (-)
G506641 NA other downstream 644946 39623685 ~ 39624344 (-)
aopep cssa24h9orf3 other downstream 845800 39313471 ~ 39434971 (-)
G507063 NA other upstream 268218 40540659 ~ 40542329 (-)
G507906 selenop other upstream 1148583 41421024 ~ 41461922 (-)
znf131 znf131 other upstream 1162534 41431651 ~ 41459095 (-)
G508303 NA other upstream 1548414 41820855 ~ 41821210 (-)
G508891 NA other upstream 1871656 42144097 ~ 42144885 (-)

Expression


Co-expression Network