LOC110525940 (LOC106585171)


Basic Information

Item Value
gene id LOC110525940
gene name LOC106585171
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40056011 ~ 40132392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980099.1
gtatctggtcaatataaAGGATAATACTTGTCTTTAACCACAAGTAATAAACCCTGCGCATTTCTTaaatgtatcttcttaaaattGCAAACCTTATGCTTAACCTTAAATGAAGACAAAAAAAGCCAATTTTTGTTGCAAATTTGACTTTTGTGCCagtggaatctgactttgtggatATAGAAGTTAGTGGAAACCAATACTCTATTCGGGCCAATTCCGAATGGATGTGTGTGCAACGGGCGGTGGAATGGAATATTGGAACCAATTTGGTGGTTGAAGATTAGCGAACCCCTACTACAAATCACTCAATTTATATAGTCTGTGCGTTTAGCCCCCTGCAAGCTATCCAAATGTAACAGGAAAAATATAGACCAGACACACGCGGTAAACTGCTTGTAGCTTCGCCAAACGTGGGGGATATTGTTGGCCAAACCAAAAGAAAAAAACAAgcccatttttttttattaagccTTTGCACCGAGAGGGGGAGCACCTTGATGTTCTAGTACACTTCACCAACTCCCCCCAGTGCTACTGTGCTGTGCTTCAGCCGCTGTTAGGAATGCGTTACTAAATGATGTAGGTCTTGCCGTGGTCTCGGGCTGTATTGATGGCTCAACCGTGATCTATCCTTTGATGGGATTCCGCGCCAAATTACGCACGAAACACAACGGTCTTCGGAATTGGAATGGAAATGCCCTCCCAACGCTGCATTCGGAGCCGACGATATGAACCATGCCTAGTTAATTTTACAAGGATTTCTCCTTTATCCAGTGTGTAGACCGTGAACGAGtttgaaatgtatacattttaTTCGGATTTGGAATAAAACGAAAAGcaattcatccgtgaagagcgaGGTGTTGCTGTCGATTTCTTTTTTTTAATCTATTCAGCAAATATCAAAGAATTTTAGATGGAACTGGAGAATATTGTGGCCAATACGGTACTGCTAAAAGCAAGAGAAGgtggaGGAGGGAAGCGGAAAGGGAGGAGTAAGAAATGGAAGGAGATCCTTCGCTTCCCCCACATCAGCCAGTGCACTGAGCTGGGCAACAGCATCGATCGGGACTACATGAGCCTGTGTGAGAAGCAGCCCATCGGCAGACTGCTGTTCCGCCTGTACTGTGAGACCAGACCTGAATTGCTGCGATGCATCCACCTACTGGACGccatgGATGACTATGAGCTGGCGCCTGATGAGAAACGGAAAAGCAGAGGAGGTGAAATTATTGGGAAGTTCCTCACTAAACAGTCGTCAGAGTGTGTGGAGGCAGCAGAGAGCCTTGCTGAGCAGTGTAGAGAGAACCTGGAACTTCACCCCTGCAAGGAGATCTTCAGTGACTGTCGCAAGGCTCTCCATGACTACCTGAGACGAGCTCCCTTCTCTGACTACCAAAACAGCATGTACTTTGACCGTTTCCTACAGTGGAAGATGCTGGAGAGACAGCCAATAACTAAAGACACGTTTCGACAGTACCGAGTACTGGGGAAGGGAGGATTCGGAGAGGTGTGTGCGTGCCAGGTGCGAGCCACAGGGAAGATGTATGCCTGCAAGAAGCTGGAGAAGAAGAGAAttaagaagaggaaaggagagtccATGGCCCTTAATGAGAAACAAATACTAGAGAAGGTCAACAGCAGATTTGTTGTGAGTTTAGCATATGCCTATGAGACCAAAGATGCTCTGTGTCTGGTGCTGACCTTAATGAATGGAGGGGATCTGAAGTTCCACATCTACAGCATGGGGACTCCAGGCTTTGAGAAGGACCGGGTCCAGTTCTATGCTGCCCAGATCTGCTGCGGCCTGGACCACCTACACCAGGAATCGATCGTCTACAGGGATTTAAAACCAGAGAATATTCTATTAGATGACAATGGACACATCCGGATCTCAGATCTGGGCCTGGCCATCAAAGTGCCTGAAGGGGACCCCATACGAGGCAGagtgggaacagtgggttacatGGCTCCGGAGGTGATCAACAACGAGCGCTATGGGATGAGTCCAGACTGGTGGGGGCTGGGATGTCTCATCTACGAGATGACCGCCGGACGCTCACCCTTCCGCGCACGCAAAGAACGAGTGAAGAGGGAAGAAGTGGAGAAGAGGgtgcaggagggagaggaggagtacaGCGACAAGTTTACAGAGGACACCCAGGCCATCTGTAGAGTGCTGTTGACCAAAGATCCTAAGCAGAGGCTGGGCTGTACAACGGAGGGGTCAACAGGGGTGAAGGCTCACTGCTTCTTCAGGAACATCAACTTTAAGAGACTAGAGGCAGGCATCCAGGAGCCCTCCTTTGTACCTGATccccggGCGGTGTACTGTAAGGATGTGTTGGACATTGAGCAGTTCTCTACAGTCAAGGGAGTAAATCTGGACCAAACCGACAACGACTTCTACTTCAAATTCTCTACAGGCTGCGTGTCCATCCCATGGCAGCACGAGaTGATAGACACAGAGTGTTTCAGTGATCTGAATGTGTTCGGGCCCCAGGCGACCAGAACCCCAGATCTGGACTGGAACACACCCCCCGAGCCTCCCCGACGCAGCCTGCTGGACAGGATCTTCAGGAGACatcACCCCGAGGTGTCCATCGCCAACAGTCGCGTGTCTTCCTGCAGTGTGAACTCAGTGGACTCCATGTCAAACTCTGCCCCCTAGTGGCCATGGCTCTGTGTGgcgccacacacagacagaggaggagCCGGAAGGATCTTCTCACTGCTGATTGGTTTACACCTGGCCTGACCAGCTGTCAGTCTTCCGGAGGCACCCAACCCAAGCCCATGGTCAGTCTAGGGGAAATGCTGACCATGACCCGGACCTGAGACCCATGGGGAATTATTGGAGGGACGTTTAAATAACGCAAATACGTTTTGAAAACAATGCTCAGACACTTCACTTACCTTCAGGATCGCTGGAGTAGAGAAGAGCCACTGACTGTGTTGATGAATAAGAAAAAACTAGCTAATTCAGGGGATCCACTGTCTGAGAAAGACCACAGGAAATACAAGATGGGGTCTTTGttgctgtttattttttattttgaaagaAATCAAATTATTTGCATAAATTCACATTCACACTCAAATGCACTCTCTGTTCAtttattcctctcttcccccctccccctctctctttttgtctctttctccttttcacctccctctcccctaaTCACTTATAAACGTACATGCAACCAACAACATCACCAACCTCAAGACACAATGTGCATATTGCCTTGTATACCCTCAGGCCAAAGATATAGTTCAGTTATGTATTTGTGTTATTGTTGCCATACCCGTtttggaggaggaagggggattTGCCTGGTCTTTATTCAATCCCATATTCAACTTGAGGCAGCAGCTATGCTACACCTAAGTCACAATCAAACATGTGTTTGCATACAACaggcttccccccccccccccccccccccacgcacacacacaactgtgTTATTAGAATTGTAACCACAATACTTGTCTTGTTTTCTGCACTTTTCCCAAAGAGTGCACCACCGCGCCCTGTTGACCTTGAGAAAAAGTAGATTTGCCAAACCAGTAAGCCACCATTTATTCACCAATTAAGATGTTTTTACAGTAAAGATGTTATTGTTTTACCTCAGACATTAAAGTAATATTACTGTGATGTAAATGTTGTAATATCCATTGAGCCAGtgctgttttgtgtttgtgttgcCATCACGACCATGGGTGCATCTCGATAGTCTCAATAGGGAggttttctctcctccttttcttcaGCTGCACTGATCCTAAAGGAAAGGTGAGGAATCCTGGAAGATATATGACCTTTTTCTACAGGAAAGGAGCTTTAACCAATCCAGTGCGGATAAAGGAGAGGGAAGCCGTGTTAGACTATTGAGGTTCCGGGGCTCTGGTAGAGTAATTGGTAAAGGGACCACATGTCACCTCACAATGGGAAGCCTTCCAACACACTCAAACCAAAGGGAAGAAAAGCTTTGGTTTTGGAATTTGATGTCTTATTTTAAGGAAGACTGAATATTTACAGAAAACAATTGTACTTACACATGTAGTCTTGGCCAGTTATTATTTTATTCGTAAATCATTTCACAAATTGAAAATCAGAAGTGCCTCCTCTTTAGCCTGATCTTCTAGACGACTCGCACACAAATGTTTGCACTTTGTTTCTCTCATGATCGATTTGTTTctttatgacacacacacacactgtatttggCTGGTGGTGGAGGCtggggagtgtggagagagagagagaggataaggagGATGAAAAGGAGAGAACGAGGATGGATCTCTTCCTGCTATTGTTGTACATTACAGTGCTGAGTGTACAGAATGTAAAGCCAAACCCACTGTGCTCTGCAGCTCCGAATAAATAAACCCTGTGCTGCCTTAGCATATCTGTA
>XR_005052102.1
gtatctggtcaatataaAGGATAATACTTGTCTTTAACCACAAGTAATAAACCCTGCGCATTTCTTaaatgtatcttcttaaaattGCAAACCTTATGCTTAACCTTAAATGAAGACAAAAAAAGCCAATTTTTGTTGCAAATTTGACTTTTGTGCCagtggaatctgactttgtggatATAGAAGTTAGTGGAAACCAATACTCTATTCGGGCCAATTCCGAATGGATGTGTGTGCAACGGGCGGTGGAATGGAATATTGGAACCAATTTGGTGGTTGAAGATTAGCGAACCCCTACTACAAATCACTCAATTTATATAGTCTGTGCGTTTAGCCCCCTGCAAGCTATCCAAATGTAACAGGAAAAATATAGACCAGACACACGCGGTAAACTGCTTGTAGCTTCGCCAAACGTGGGGGATATTGTTGGCCAAACCAAAAGAAAAAAACAAgcccatttttttttattaagccTTTGCACCGAGAGGGGGAGCACCTTGATGTTCTAGTACACTTCACCAACTCCCCCCAGTGCTACTGTGCTGTGCTTCAGCCGCTGTTAGGAATGCGTTACTAAATGATGTAGGTCTTGCCGTGGTCTCGGGCTGTATTGATGGCTCAACCGTGATCTATCCTTTGATGGGATTCCGCGCCAAATTACGCACGAAACACAACGGTCTTCGGAATTGGAATGGAAATGCCCTCCCAACGCTGCATTCGGAGCCGACGATATGAACCATGCCTAGTTAATTTTACAAGGATTTCTCCTTTATCCAGTGTGTAGACCGTGAACGAGtttgaaatgtatacattttaTTCGGATTTGGAATAAAACGAAAAGcaattcatccgtgaagagcgaGGTGTTGCTGTCGATTTCTTTTTTTTAATCTATTCAGCAAATATCAAAGAATTTTAGATGGAACTGGAGAATATTGTGGCCAATACGGTACTGCTAAAAGCAAGAGAAGgtggaGGAGGGAAGCGGAAAGGGAGGAGTAAGAAATGGAAGGAGATCCTTCGCTTCCCCCACATCAGCCAGTGCACTGAGCTGGGCAACAGCATCGATCGGGACTACATGAGCCTGTGTGAGAAGCAGCCCATCGGCAGACTGCTGTTCCGCCTGTACTGTGAGACCAGACCTGAATTGCTGCGATGCATCCACCTACTGGACGccatgGATGACTATGAGCTGGCGCCTGATGAGAAACGGAAAAGCAGAGGAGGTGAAATTATTGGGAAGTTCCTCACTAAACAGTCGTCAGAGTGTGTGGAGGCAGCAGAGAGCCTTGCTGAGCAGTGTAGAGAGAACCTGGAACTTCACCCCTGCAAGGAGATCTTCAGTGACTGTCGCAAGGCTCTCCATGACTACCTGAGACGAGCTCCCTTCTCTGACTACCAAAACAGCATGTACTTTGACCGTTTCCTACAGTGGAAGATGCTGGAGAGACAGCCAATAACTAAAGACACGTTTCGACAGTACCGAGTACTGGGGAAGGGAGGATTCGGAGAGGTGTGTGCGTGCCAGGTGCGAGCCACAGGGAAGATGTATGCCTGCAAGAAGCTGGAGAAGAAGAGAAttaagaagaggaaaggagagtccATGGCCCTTAATGAGAAACAAATACTAGAGAAGGTCAACAGCAGATTTGTTGTGAGTTTAGCATATGCCTATGAGACCAAAGATGCTCTGTGTCTGGTGCTGACCTTAATGAATGGAGGGGATCTGAAGTTCCACATCTACAGCATGGGGACTCCAGGCTTTGAGAAGGACCGGGTCCAGTTCTATGCTGCCCAGATCTGCTGCGGCCTGGACCACCTACACCAGGAATCGATCGTCTACAGGGATTTAAAACCAGAGAATATTCTATTAGATGACAATGGACACATCCGGATCTCAGATCTGGGCCTGGCCATCAAAGTGCCTGAAGGGGACCCCATACGAGGCAGagtgggaacagtgggttacatGGCTCCGGAGGTGATCAACAACGAGCGCTATGGGATGAGTCCAGACTGGTGGGGGCTGGGATGTCTCATCTACGAGATGACCGCCGGACGCTCACCCTTCCGCGCACGCAAAGAACGAGTGAAGAGGGAAGAAGTGGAGAAGAGGgtgcaggagggagaggaggagtacaGCGACAAGTTTACAGAGGACACCCAGGCCATCTGTAGAGTGCTGTTGACCAAAGATCCTAAGCAGAGGCTGGGCTGTACAACGGAGGGGTCAACAGGGGTGAAGGCTCACTGCTTCTTCAGGAACATCAACTTTAAGAGACTAGAGGCAGGCATCCAGGAGCCCTCCTTTGTACCTGATccccggGCGGTGTACTGTAAGGATGTGTTGGACATTGAGCAGTTCTCTACAGTCAAGGGAGTAAATCTGGACCAAACCGACAACGACTTCTACTTCAAATTCTCTACAGGCTGCGTGTCCATCCCATGGCAGCACGAGGTGGGTGAACTAAATGGGacgtctttccctctcctctggcCTCTTCTGAGAGGTAGTCTGCAAGaTGATAGACACAGAGTGTTTCAGTGATCTGAATGTGTTCGGGCCCCAGGCGACCAGAACCCCAGATCTGGACTGGAACACACCCCCCGAGCCTCCCCGACGCAGCCTGCTGGACAGGATCTTCAGGAGACatcACCCCGAGGTGTCCATCGCCAACAGTCGCGTGTCTTCCTGCAGTGTGAACTCAGTGGACTCCATGTCAAACTCTGCCCCCTAGTGGCCATGGCTCTGTGTGgcgccacacacagacagaggaggagCCGGAAGGATCTTCTCACTGCTGATTGGTTTACACCTGGCCTGACCAGCTGTCAGTCTTCCGGAGGCACCCAACCCAAGCCCATGGTCAGTCTAGGGGAAATGCTGACCATGACCCGGACCTGAGACCCATGGGGAATTATTGGAGGGACGTTTAAATAACGCAAATACGTTTTGAAAACAATGCTCAGACACTTCACTTACCTTCAGGATCGCTGGAGTAGAGAAGAGCCACTGACTGTGTTGATGAATAAGAAAAAACTAGCTAATTCAGGGGATCCACTGTCTGAGAAAGACCACAGGAAATACAAGATGGGGTCTTTGttgctgtttattttttattttgaaagaAATCAAATTATTTGCATAAATTCACATTCACACTCAAATGCACTCTCTGTTCAtttattcctctcttcccccctccccctctctctttttgtctctttctccttttcacctccctctcccctaaTCACTTATAAACGTACATGCAACCAACAACATCACCAACCTCAAGACACAATGTGCATATTGCCTTGTATACCCTCAGGCCAAAGATATAGTTCAGTTATGTATTTGTGTTATTGTTGCCATACCCGTtttggaggaggaagggggattTGCCTGGTCTTTATTCAATCCCATATTCAACTTGAGGCAGCAGCTATGCTACACCTAAGTCACAATCAAACATGTGTTTGCATACAACaggcttccccccccccccccccccccccacgcacacacacaactgtgTTATTAGAATTGTAACCACAATACTTGTCTTGTTTTCTGCACTTTTCCCAAAGAGTGCACCACCGCGCCCTGTTGACCTTGAGAAAAAGTAGATTTGCCAAACCAGTAAGCCACCATTTATTCACCAATTAAGATGTTTTTACAGTAAAGATGTTATTGTTTTACCTCAGACATTAAAGTAATATTACTGTGATGTAAATGTTGTAATATCCATTGAGCCAGtgctgttttgtgtttgtgttgcCATCACGACCATGGGTGCATCTCGATAGTCTCAATAGGGAggttttctctcctccttttcttcaGCTGCACTGATCCTAAAGGAAAGGTGAGGAATCCTGGAAGATATATGACCTTTTTCTACAGGAAAGGAGCTTTAACCAATCCAGTGCGGATAAAGGAGAGGGAAGCCGTGTTAGACTATTGAGGTTCCGGGGCTCTGGTAGAGTAATTGGTAAAGGGACCACATGTCACCTCACAATGGGAAGCCTTCCAACACACTCAAACCAAAGGGAAGAAAAGCTTTGGTTTTGGAATTTGATGTCTTATTTTAAGGAAGACTGAATATTTACAGAAAACAATTGTACTTACACATGTAGTCTTGGCCAGTTATTATTTTATTCGTAAATCATTTCACAAATTGAAAATCAGAAGTGCCTCCTCTTTAGCCTGATCTTCTAGACGACTCGCACACAAATGTTTGCACTTTGTTTCTCTCATGATCGATTTGTTTctttatgacacacacacacactgtatttggCTGGTGGTGGAGGCtggggagtgtggagagagagagagaggataaggagGATGAAAAGGAGAGAACGAGGATGGATCTCTTCCTGCTATTGTTGTACATTACAGTGCTGAGTGTACAGAATGTAAAGCCAAACCCACTGTGCTCTGCAGCTCCGAATAAATAAACCCTGTGCTGCCTTAGCATATCTGTA
>TU575406
TTTTCTGCACTTTTCCCAAAGAGTGCACCACCGCGCCCTGTTGACCTTGAGAAAAAGTAGATTTGCCAAACCAGTAAGCCACCATTTATTCACCAATTAAGATGTTTTTACAGTAAAGATGTTATTGTTTTACCTCAGACATTAAAGTAATATTACTGTGATGTAAATGTTGTAATATCCATTGAGCCAGtgctgttttgtgtttgtgttgcCATCACGACCATGGGTGCATCTCGATAGTCTCAATAGGGAggttttctctcctccttttcttcaGCTGCACTGATCCTAAAGGAAAGGTGAGGAATCCTGGAAGATATATGACCTTTTTCTACAGGAAAGGAGCTTTAACCAATCCAGTGCGGATAAAGGAGAGGGAAGCCGTGTTAGACTATTGAGGTTCCGGGGCTCTGGTAGAGTAATTGGTAAAGGGACCACATGTCACCTCACAATGGGAAGCCTTCCAACACACTCAAACCAAAGGGAAGAAAAGCTTTGGTTTTGGAATTTGATGTCTTATTTTAAGGAAGACTGAATATTTACAGAAAACAATTGTACTTACACATGTAGTCTTGGCCAGTTATTATTTTATTCGTAAATCATTTCACAAATTGAAAATCAGAAGTGCCTCCTCTTTAGCCTGATCTTCTAGACGACTCGCACACAAATGTTTGCACTTTGTTTCTCTCATGATCGATTTGTTTctttatgacacacacacacactgtatttggCTGGTGGTGGAGGCtggggagtgtggagagagagagagaggataaggagGATGAAAAGGAGAGAACGAGGATGGATCTCTTCCTGCTATTGTTGTACATTACAGTGCTGAGTGTACAGAATGTAAAGCCAAACCCACTGTGCTCTGCAGCTCCGAATAAATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980099.1 False 4430 mRNA 0.47 16 40056011 40132392
XR_005052102.1 False 4494 mRNA 0.47 16 40056011 40132392
TU575406 True 899 lncRNA 0.41 1 40056036 40056934

Neighbor

gene id symbol gene type direction distance location
star star coding downstream 15412 40036206 ~ 40040599 (-)
LOC110525939 LOC106585169 coding downstream 22284 40021719 ~ 40033727 (-)
LOC110525938 aebp1 coding downstream 72936 39958861 ~ 39983075 (-)
npc1l1 npc1l1 coding downstream 109433 39935328 ~ 39946578 (-)
gk gk coding downstream 144189 39906570 ~ 39911822 (-)
LOC110525941 LOC106585172 coding upstream 3805 40136197 ~ 40139203 (-)
LOC110525946 atp5a1 coding upstream 62173 40194565 ~ 40204986 (-)
LOC110525948 LOC106585177 coding upstream 83763 40216155 ~ 40257079 (-)
LOC110515628 LOC106584960 coding upstream 136898 40269290 ~ 40272441 (-)
mrps27 mrps27 coding upstream 149239 40281631 ~ 40287046 (-)
G506866 LOC106563826 non-coding downstream 6445 40049303 ~ 40049566 (-)
G506865 NA non-coding downstream 7178 40048629 ~ 40048833 (-)
G506806 NA non-coding downstream 104089 39951699 ~ 39951922 (-)
G506805 NA non-coding downstream 108286 39947501 ~ 39947725 (-)
G506802 NA non-coding downstream 123156 39932520 ~ 39932855 (-)
G506894 NA non-coding upstream 26649 40159041 ~ 40159271 (-)
G506897 NA non-coding upstream 30792 40163184 ~ 40163407 (-)
G506899 NA non-coding upstream 32303 40164695 ~ 40165126 (-)
G506901 NA non-coding upstream 33964 40166356 ~ 40166643 (-)
G506910 NA non-coding upstream 44825 40177217 ~ 40177427 (-)
G506785 NA other downstream 166080 39887022 ~ 39889931 (-)
LOC110525932 LOC106585164 other downstream 217851 39826260 ~ 39877951 (-)
LOC110525929 LOC106585162 other downstream 291235 39751726 ~ 39778538 (-)
G506641 NA other downstream 431667 39623685 ~ 39624344 (-)
aopep cssa24h9orf3 other downstream 632521 39313471 ~ 39434971 (-)
G507063 NA other upstream 408267 40540659 ~ 40542329 (-)
G507906 selenop other upstream 1288632 41421024 ~ 41461922 (-)
znf131 znf131 other upstream 1302583 41431651 ~ 41459095 (-)
G508303 NA other upstream 1688463 41820855 ~ 41821210 (-)
G508891 NA other upstream 2011705 42144097 ~ 42144885 (-)

Expression


Co-expression Network