RNA id: XR_005052102.1


Basic Information

Item Value
RNA id XR_005052102.1
length 4494
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110525940
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40056011 ~ 40132392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatctggtcaatataaAGGATAATACTTGTCTTTAACCACAAGTAATAAACCCTGCGCATTTCTTaaatgtatcttcttaaaattGCAAACCTTATGCTTAACCTTAAATGAAGACAAAAAAAGCCAATTTTTGTTGCAAATTTGACTTTTGTGCCagtggaatctgactttgtggatATAGAAGTTAGTGGAAACCAATACTCTATTCGGGCCAATTCCGAATGGATGTGTGTGCAACGGGCGGTGGAATGGAATATTGGAACCAATTTGGTGGTTGAAGATTAGCGAACCCCTACTACAAATCACTCAATTTATATAGTCTGTGCGTTTAGCCCCCTGCAAGCTATCCAAATGTAACAGGAAAAATATAGACCAGACACACGCGGTAAACTGCTTGTAGCTTCGCCAAACGTGGGGGATATTGTTGGCCAAACCAAAAGAAAAAAACAAgcccatttttttttattaagccTTTGCACCGAGAGGGGGAGCACCTTGATGTTCTAGTACACTTCACCAACTCCCCCCAGTGCTACTGTGCTGTGCTTCAGCCGCTGTTAGGAATGCGTTACTAAATGATGTAGGTCTTGCCGTGGTCTCGGGCTGTATTGATGGCTCAACCGTGATCTATCCTTTGATGGGATTCCGCGCCAAATTACGCACGAAACACAACGGTCTTCGGAATTGGAATGGAAATGCCCTCCCAACGCTGCATTCGGAGCCGACGATATGAACCATGCCTAGTTAATTTTACAAGGATTTCTCCTTTATCCAGTGTGTAGACCGTGAACGAGtttgaaatgtatacattttaTTCGGATTTGGAATAAAACGAAAAGcaattcatccgtgaagagcgaGGTGTTGCTGTCGATTTCTTTTTTTTAATCTATTCAGCAAATATCAAAGAATTTTAGATGGAACTGGAGAATATTGTGGCCAATACGGTACTGCTAAAAGCAAGAGAAGgtggaGGAGGGAAGCGGAAAGGGAGGAGTAAGAAATGGAAGGAGATCCTTCGCTTCCCCCACATCAGCCAGTGCACTGAGCTGGGCAACAGCATCGATCGGGACTACATGAGCCTGTGTGAGAAGCAGCCCATCGGCAGACTGCTGTTCCGCCTGTACTGTGAGACCAGACCTGAATTGCTGCGATGCATCCACCTACTGGACGccatgGATGACTATGAGCTGGCGCCTGATGAGAAACGGAAAAGCAGAGGAGGTGAAATTATTGGGAAGTTCCTCACTAAACAGTCGTCAGAGTGTGTGGAGGCAGCAGAGAGCCTTGCTGAGCAGTGTAGAGAGAACCTGGAACTTCACCCCTGCAAGGAGATCTTCAGTGACTGTCGCAAGGCTCTCCATGACTACCTGAGACGAGCTCCCTTCTCTGACTACCAAAACAGCATGTACTTTGACCGTTTCCTACAGTGGAAGATGCTGGAGAGACAGCCAATAACTAAAGACACGTTTCGACAGTACCGAGTACTGGGGAAGGGAGGATTCGGAGAGGTGTGTGCGTGCCAGGTGCGAGCCACAGGGAAGATGTATGCCTGCAAGAAGCTGGAGAAGAAGAGAAttaagaagaggaaaggagagtccATGGCCCTTAATGAGAAACAAATACTAGAGAAGGTCAACAGCAGATTTGTTGTGAGTTTAGCATATGCCTATGAGACCAAAGATGCTCTGTGTCTGGTGCTGACCTTAATGAATGGAGGGGATCTGAAGTTCCACATCTACAGCATGGGGACTCCAGGCTTTGAGAAGGACCGGGTCCAGTTCTATGCTGCCCAGATCTGCTGCGGCCTGGACCACCTACACCAGGAATCGATCGTCTACAGGGATTTAAAACCAGAGAATATTCTATTAGATGACAATGGACACATCCGGATCTCAGATCTGGGCCTGGCCATCAAAGTGCCTGAAGGGGACCCCATACGAGGCAGagtgggaacagtgggttacatGGCTCCGGAGGTGATCAACAACGAGCGCTATGGGATGAGTCCAGACTGGTGGGGGCTGGGATGTCTCATCTACGAGATGACCGCCGGACGCTCACCCTTCCGCGCACGCAAAGAACGAGTGAAGAGGGAAGAAGTGGAGAAGAGGgtgcaggagggagaggaggagtacaGCGACAAGTTTACAGAGGACACCCAGGCCATCTGTAGAGTGCTGTTGACCAAAGATCCTAAGCAGAGGCTGGGCTGTACAACGGAGGGGTCAACAGGGGTGAAGGCTCACTGCTTCTTCAGGAACATCAACTTTAAGAGACTAGAGGCAGGCATCCAGGAGCCCTCCTTTGTACCTGATccccggGCGGTGTACTGTAAGGATGTGTTGGACATTGAGCAGTTCTCTACAGTCAAGGGAGTAAATCTGGACCAAACCGACAACGACTTCTACTTCAAATTCTCTACAGGCTGCGTGTCCATCCCATGGCAGCACGAGGTGGGTGAACTAAATGGGacgtctttccctctcctctggcCTCTTCTGAGAGGTAGTCTGCAAGaTGATAGACACAGAGTGTTTCAGTGATCTGAATGTGTTCGGGCCCCAGGCGACCAGAACCCCAGATCTGGACTGGAACACACCCCCCGAGCCTCCCCGACGCAGCCTGCTGGACAGGATCTTCAGGAGACatcACCCCGAGGTGTCCATCGCCAACAGTCGCGTGTCTTCCTGCAGTGTGAACTCAGTGGACTCCATGTCAAACTCTGCCCCCTAGTGGCCATGGCTCTGTGTGgcgccacacacagacagaggaggagCCGGAAGGATCTTCTCACTGCTGATTGGTTTACACCTGGCCTGACCAGCTGTCAGTCTTCCGGAGGCACCCAACCCAAGCCCATGGTCAGTCTAGGGGAAATGCTGACCATGACCCGGACCTGAGACCCATGGGGAATTATTGGAGGGACGTTTAAATAACGCAAATACGTTTTGAAAACAATGCTCAGACACTTCACTTACCTTCAGGATCGCTGGAGTAGAGAAGAGCCACTGACTGTGTTGATGAATAAGAAAAAACTAGCTAATTCAGGGGATCCACTGTCTGAGAAAGACCACAGGAAATACAAGATGGGGTCTTTGttgctgtttattttttattttgaaagaAATCAAATTATTTGCATAAATTCACATTCACACTCAAATGCACTCTCTGTTCAtttattcctctcttcccccctccccctctctctttttgtctctttctccttttcacctccctctcccctaaTCACTTATAAACGTACATGCAACCAACAACATCACCAACCTCAAGACACAATGTGCATATTGCCTTGTATACCCTCAGGCCAAAGATATAGTTCAGTTATGTATTTGTGTTATTGTTGCCATACCCGTtttggaggaggaagggggattTGCCTGGTCTTTATTCAATCCCATATTCAACTTGAGGCAGCAGCTATGCTACACCTAAGTCACAATCAAACATGTGTTTGCATACAACaggcttccccccccccccccccccccccacgcacacacacaactgtgTTATTAGAATTGTAACCACAATACTTGTCTTGTTTTCTGCACTTTTCCCAAAGAGTGCACCACCGCGCCCTGTTGACCTTGAGAAAAAGTAGATTTGCCAAACCAGTAAGCCACCATTTATTCACCAATTAAGATGTTTTTACAGTAAAGATGTTATTGTTTTACCTCAGACATTAAAGTAATATTACTGTGATGTAAATGTTGTAATATCCATTGAGCCAGtgctgttttgtgtttgtgttgcCATCACGACCATGGGTGCATCTCGATAGTCTCAATAGGGAggttttctctcctccttttcttcaGCTGCACTGATCCTAAAGGAAAGGTGAGGAATCCTGGAAGATATATGACCTTTTTCTACAGGAAAGGAGCTTTAACCAATCCAGTGCGGATAAAGGAGAGGGAAGCCGTGTTAGACTATTGAGGTTCCGGGGCTCTGGTAGAGTAATTGGTAAAGGGACCACATGTCACCTCACAATGGGAAGCCTTCCAACACACTCAAACCAAAGGGAAGAAAAGCTTTGGTTTTGGAATTTGATGTCTTATTTTAAGGAAGACTGAATATTTACAGAAAACAATTGTACTTACACATGTAGTCTTGGCCAGTTATTATTTTATTCGTAAATCATTTCACAAATTGAAAATCAGAAGTGCCTCCTCTTTAGCCTGATCTTCTAGACGACTCGCACACAAATGTTTGCACTTTGTTTCTCTCATGATCGATTTGTTTctttatgacacacacacacactgtatttggCTGGTGGTGGAGGCtggggagtgtggagagagagagagaggataaggagGATGAAAAGGAGAGAACGAGGATGGATCTCTTCCTGCTATTGTTGTACATTACAGTGCTGAGTGTACAGAATGTAAAGCCAAACCCACTGTGCTCTGCAGCTCCGAATAAATAAACCCTGTGCTGCCTTAGCATATCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575436 lncRNA downstream 6445 40049303 ~ 40049566 (-) True G506866
TU575435 lncRNA downstream 7178 40048629 ~ 40048833 (-) True G506865
TU575373 lncRNA downstream 104089 39951699 ~ 39951922 (-) True G506806
TU575372 lncRNA downstream 108286 39947501 ~ 39947725 (-) True G506805
TU575369 lncRNA downstream 123156 39932520 ~ 39932855 (-) True G506802
TU575468 lncRNA upstream 26649 40159041 ~ 40159271 (-) True G506894
TU575471 lncRNA upstream 30792 40163184 ~ 40163407 (-) True G506897
TU575473 lncRNA upstream 32303 40164695 ~ 40165126 (-) True G506899
TU575475 lncRNA upstream 33964 40166356 ~ 40166643 (-) True G506901
TU575484 lncRNA upstream 44825 40177217 ~ 40177427 (-) True G506910
NM_001124202.1 mRNA downstream 15412 40036206 ~ 40040599 (-) True star
XM_021606465.2 mRNA downstream 22284 40021719 ~ 40033727 (-) False LOC110525939
XM_036980097.1 mRNA downstream 22284 40021719 ~ 40033727 (-) True LOC110525939
XM_036980098.1 mRNA downstream 22477 40021719 ~ 40033534 (-) False LOC110525939
XM_036980095.1 mRNA downstream 72936 39958861 ~ 39983075 (-) True LOC110525938
XM_021606468.2 mRNA upstream 3805 40136197 ~ 40139191 (-) False LOC110525941
XM_021606469.2 mRNA upstream 3805 40136197 ~ 40139203 (-) True LOC110525941
XM_021606473.2 mRNA upstream 62173 40194565 ~ 40204986 (-) True LOC110525946
XM_036980101.1 mRNA upstream 83763 40216155 ~ 40257079 (-) True LOC110525948
XM_036980102.1 mRNA upstream 136898 40269290 ~ 40272441 (-) False LOC110515628
TU575349 other downstream 166080 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 217851 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 291235 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 431667 39623685 ~ 39624344 (-) True G506641
TU573926 other downstream 632521 39421668 ~ 39423490 (-) True aopep
TU575676 other upstream 408267 40540659 ~ 40542329 (-) True G507063
TU576563 other upstream 1288632 41421024 ~ 41461922 (-) True G507906
TU576567 other upstream 1302583 41434975 ~ 41439014 (-) True znf131
TU577033 other upstream 1688463 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 2011705 42144097 ~ 42144885 (-) True G508891

Expression Profile