RNA id: TU575475


Basic Information

Item Value
RNA id TU575475
length 288
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G506901
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40166356 ~ 40166643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgacattcatgtctcgcaggaaatcatgcacagaacgagcagtatggctggtggcattgtcatgctgtcaGGATGAGCCTtgcggaagggtaccacatgagggaggaggatgtcttccctgtaacacacagcattgagattgcctccaatgacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaaatcgatcccgctccagagtacaggcctcggtgtaacgctcattactttgacgataaacgcgaatccgac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575473 lncRNA downstream 1230 40164695 ~ 40165126 (-) True G506899
TU575471 lncRNA downstream 2949 40163184 ~ 40163407 (-) True G506897
TU575468 lncRNA downstream 7085 40159041 ~ 40159271 (-) True G506894
TU575406 lncRNA downstream 109422 40056036 ~ 40056934 (-) True LOC110525940
TU575436 lncRNA downstream 116790 40049303 ~ 40049566 (-) True G506866
TU575484 lncRNA upstream 10574 40177217 ~ 40177427 (-) True G506910
TU575488 lncRNA upstream 16408 40183051 ~ 40183328 (-) True G506914
TU575489 lncRNA upstream 17031 40183674 ~ 40184108 (-) True G506915
TU575495 lncRNA upstream 92686 40259329 ~ 40259529 (-) True G506921
TU575521 lncRNA upstream 101101 40267744 ~ 40267953 (-) True G506945
XM_021606469.2 mRNA downstream 27153 40136197 ~ 40139203 (-) True LOC110525941
XM_021606468.2 mRNA downstream 27165 40136197 ~ 40139191 (-) False LOC110525941
XM_036980099.1 mRNA downstream 33964 40056011 ~ 40132392 (-) False LOC110525940
XR_005052102.1 mRNA downstream 33964 40056011 ~ 40132392 (-) False LOC110525940
NM_001124202.1 mRNA downstream 125757 40036206 ~ 40040599 (-) True star
XM_021606473.2 mRNA upstream 27922 40194565 ~ 40204986 (-) True LOC110525946
XM_036980101.1 mRNA upstream 49512 40216155 ~ 40257079 (-) True LOC110525948
XM_036980102.1 mRNA upstream 102647 40269290 ~ 40272441 (-) False LOC110515628
XM_021606480.2 mRNA upstream 114988 40281631 ~ 40287046 (-) False mrps27
XM_036980103.1 mRNA upstream 127317 40293960 ~ 40303383 (-) True LOC110525952
TU575349 other downstream 276425 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 328196 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 401580 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 542012 39623685 ~ 39624344 (-) True G506641
TU573926 other downstream 742866 39421668 ~ 39423490 (-) True aopep
TU575676 other upstream 374016 40540659 ~ 40542329 (-) True G507063
TU576563 other upstream 1254381 41421024 ~ 41461922 (-) True G507906
TU576567 other upstream 1268332 41434975 ~ 41439014 (-) True znf131
TU577033 other upstream 1654212 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 1977454 42144097 ~ 42144885 (-) True G508891

Expression Profile