XLOC_023953


Basic Information

Item Value
gene id XLOC_023953
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 13619831 ~ 13625723 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047567
tctatctatctatctattaccAGTGTGATGATCAAACATGGTGGAAACATGCCAACAATGTCCTAAAACCACTTACACTATGCTAAATCTTGCTAAAATATGCAATAAACCTTGACAAATGTTAGCATTGTGTTAAAATTTAGGTTTAAACTAGGCATTGTGTACAAAAAAAGTAACAATCTAGATGTTTTTATGTCGTCCATTTGTTTTTATGCTAAGTCGTCTCACATCTGACCTATTAAAAATGACATATTAAGTATGAAATATTCTACGATTACTGTCATTCAATGAAGAACTTCATTTATCCATTAACCATGATCAGTTTTGGACAATTACACGAGCTGAGCACTAATAAACAAGTGTGTAGCCCACGATGAAGCCATTGTCATTGTTCAGCAGCTTCACAGTCATTAATGCATGAGttgatttaatttatatttgtagGCGACTCAAAGCTTCTCTCCAAGGAGCACGTCCACCAATTCTGAGAAGGGCCCATTGTTCCCACCAACAGGATGCTAAATTTACCCACCAGAGAACAAAGCTGGTGTGATAATTAAGTGCATGTCAGTGCAGCGAGGGCCTGAAACGTGAGATGCCCTCAGCCTATTGTTGTGTCCAGTTCGGGGCAGTGGTGAAGTGACATCACACCATGATGTCAGGTTCAGAGGGCGGAACCAGAACTTTGGGTTCACCATGATTGGACAAAACCTCTGACTCCTCGGAAGACAACAGGCATAAGAATTAAGTAGTTGGGAAAGGtggtcataatttttttttaagcattttcctGCAGCATCTCAGTGACGGCGCTGGTTATAATGGCAACCGTGGTACCGTGTGCATCTTGCTATGGCAGCAGCAGCATTCAACTTTTCGGAAAGGGCCCTGGTGGAGATTACATGTCCCTCTTCGGCTACAGAGGGCCCAGAGGAGCGCCTCGGCCTCGTTTGGCCTGCCACGCTCCTAAAATGACCCTGCGTCAGATCTGTCGTATGTTGCGTATAATGCGGCAACTGCGCAATAAAGAAGCCGCCGCCGCAGCTGCAGCCGCCAGAAAACAGGCCTCTCCGCCCAGCTCACCTACGATCAAATCGGAAAAGCGATGTTTACCTGCCTGCTTTCGCCGCAGACGTAGTAACAATATTAAAAGAGTGAGTTAAACACTCATCATCTTCAAAACCTCCCAACATCTTCAGCCCTGCGGGAGTTTGCAAATTGGTCAACGGAGCCAGACCTCACTTTACCCAGAAGACATGAAGTGAGGGAACAAGACATTGTTCTACAATcctggattttttgttttgttttaattggtTTTAATTGGAAGAAAGTCGAGCAGATCTTTTGCTGCCTTGAATGCTGGAACTCATTTTACGTCTCATAATGACACAGGAGGTTTTTTATAAGGTTTCTTGGACTCACTAAACTCGAATTTGTAATTTATAAAATTGCAGTCCGGTCAAACAGTTTTGTGTGCTTCTGTCTGTAATTAAACTAGTGGAAAGTCTTCATCAGGGTGGAAATACGACACagctatttgtttgtttacttattcaTCTGTTTGTTGGTTTCTGTGTGGGACGGGGGGCCCAAAGTTCCCTCTTTCTCAAATGAGGTGTGATGGAAACTTAGATACTGGTGTGCATTACAGTGTTGAAACTAAACCTGCTTCTGTGTGTGTAACAACACTGTGAATTAACTCATTTCCTGTTTATCTGCCTTTGAATAACCTGTTCAATAATAAAACAACTCTGATTTGAGTGCTGTTCACAACGTGAGTGAGCATGAATAATCATTAACTCCATTTGGGCTTCGTTTTTCCAGATAAGCTACATACCAGTTTCCAGATTTGTAAAAGatttatgatttgtttgtttttttactagttaaagacacaatatgtatgtttttgtcattaaaatatccaaaaaccacTAGAAAAAAGT
>TCONS_00049205
TCGGAAGACAACAGGCATAAGAATTAAGTAGTTGGGAAAGGtggtcataatttttttttaagcattttcctGCAGCATCTCAGTGACGGCGCTGGTTATAATGGCAACCGTGGTACCGAAAACAGGCCTCTCCGCCCAGCTCACCTACGATCAAATCGGAAAAGCGATGTTTACCTGCCTGCTTTCGCCGCAGACGTAGTAACAATATTAAAAGAGTGAGTTAAACACTCATCATCTTCAAAACCTCCCAACATCTTCAGCCCTGCGGGAGTTTGCAAATTGGTCAACGGAGCCAGACCTCACTTTACCCAGAAGACATGAAGTGAGGGAACAAGACATTGTTCTACAATcctggattttttgttttgttttaattggtTTTAATTGGAAGAAAGTCGAGCAGATCTTTTGCTGCCTTGAATGCTGGAACTCATTTTACGTCTCATAATGACACAGGAGGTTTTTTATAAGGTTTCTTGGACTCACTAAACTCGAATTTGTAATTTATAAAATTGCAGTCCGGTCAAACAGTTTTGTGTGCTTCTGTCTGTAATTAAACTAGTGGAAAGTCTTCATCAGGGTGGAAATACGACACagctatttgtttgtttacttattcaTCTGTTTGTTGGTTTCTGTGTGGGACGGGGGGCCCAAAGTTCCCTCTTTCTCAAATGAGGTGTGATGGAAACTTAGATACTGGTGTGCATTACAGTGTTGAAACTAAACCTGCTTCTGTGTGTGTAACAACACTGTGAATTAACTCATTTCCTGTTTATCTGCCTTTGAATAACCTGTTCAATAATAAAACAACTCTGATTTGAGTGCTGTTCACAACGTGAGTGAGCATGAATAATCATTAACTCCATTTGGGCTTCGTTTTTCCAGATAAGCTACATACCAGTTTCCAGATTTGTAAAAGatttatgatttgtttgtttttttactagttaaagacacaatatgtatgtttttgtcattaaaatatccaaaaaccacTAGAAAAAAGT
>TCONS_00049206
ATCATGTCTGTGCTCTGGGCCGATCAGGTGTCAATGTGCATCTTGCTATGGCAGCAGCAGCATTCAACTTTTCGGAAAGGGCCCTGGTGGAGATTACATGTCCCTCTTCGGCTACAGAGGGCCCAGAGGAGCGCCTCGGCCTCGTTTGGCCTGCCACGCTCCTAAAATGACCCTGCGTCAGATCTGTCGTATGTTGCGTATAATGCGGCAACTGCGCAATAAAGAAGCCGCCGCCGCAGCTGCAGCCGCCAGAAAACAGGCCTCTCCGCCCAGCTCACCTACGATCAAATCGGAAAAGCGATGTTTACCTGCCTGCTTTCGCCGCAGACGTAGTAACAATATTAAAAGAGTGAGTTAAACACTCATCATCTTCAAAACCTCCCAACATCTTCAGCCCTGCGGGAGTTTGCAAATTGGTCAACGGAGCCAGACCTCACTTTACCCAGAAGACATGAAGTGAGGGAACAAGACATTGTTCTACAATcctggattttttgttttgttttaattggtTTTAATTGGAAGAAAGTCGAGCAGATCTTTTGCTGCCTTGAATGCTGGAACTCATTTTACGTCTCATAATGACACAGGAGGTTTTTTATAAGGTTTCTTGGACTCACTAAACTCGAATTTGTAATTTATAAAATTGCAGTCCGGTCAAACAGTTTTGTGTGCTTCTGTCTGTAATTAAACTAGTGGAAAGTCTTCATCAGGGTGGAAATACGACACagctatttgtttgtttacttattcaTCTGTTTGTTGGTTTCTGTGTGGGACGGGGGGCCCAAAGTTCCCTCTTTCTCAAATGAGGTGTGATGGAAACTTAGATACTGGTGTGCATTACAGTGTTGAAACTAAACCTGCTTCTGTGTGTGTAACAACACTGTGAATTAACTCATTTCCTGTTTATCTGCCTTTGAATAACCTGTTCAATAATAAAACAACTCTGATTTGAGTGCTGTTCACAACGTGAGTGAGCATGAATAATCATTAACTCCATTTGGGCTTCGTTTTTCCAGATAAGCTACATACCAGTTTCCAGATTTGTAAAAGatttatgatttgtttgtttttttactagttaaagacacaatatgtatgtttttgtcattaaaatatccaaaaaccacTAGAAAAAAGT
>TCONS_00047568
ATGTCTGTGCTCTGGGCCGATCAGGTGTCAAGTAAACGAATCTCTGTGTCTTCAAGCTACTTgtttagactgtgtgtgtgagGGCTTTGGTTTCTCAGGATGTGGTTAATTAATCGTGTTCTTGCTTGGTGAAAGATTTGTTATCGACTGGTGCATTGGCATAAAAGGctaaaataagtgtatatgtgtgtttgcgtTTCTTTTAGTGTGCATCTTGCTATGGCAGCAGCAGCATTCAACTTTTCGGAAAGGGCCCTGGTGGAGATTACATGTCCCTCTTCGGCTACAGAGGGCCCAGAGGAGCGCCTCGGCCTCGTTTGGCCTGCCACGCTCCTAAAATGACCCTGCGTCAGATCTGTCGTATGTTGCGTATAATGCGGCAACTGCGCAATAAAGAAGCCGCCGCCGCAGCTGCAGCCGCCAGAAAACAGGCCTCTCCGCCCAGCTCACCTACGATCAAATCGGAAAAGCGATGTTTACCTGCCTGCTTTCGCCGCAGACGTAGTAACAATATTAAAAGAGTGAGTTAAACACTCATCATCTTCAAAACCTCCCAACATCTTCAGCCCTGCGGGAGTTTGCAAATTGGTCAACGGAGCCAGACCTCACTTTACCCAGAAGACATGAAGTGAGGGAACAAGACATTGTTCTACAATcctggattttttgttttgttttaattggtTTTAATTGGAAGAAAGTCGAGCAGATCTTTTGCTGCCTTGAATGCTGGAACTCATTTTACGTCTCATAATGACACAGGAGGTTTT

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0015849 organic acid transport biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0046942 carboxylic acid transport biological_process
GO:0003260 cardioblast migration biological_process
GO:0015711 organic anion transport biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000101577

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047567 False 1949 lncRNA 0.41 3 13619831 13625723
TCONS_00049205 False 1010 lncRNA 0.39 2 13620552 13625723
TCONS_00049206 False 1144 lncRNA 0.42 3 13621560 13625723
TCONS_00047568 True 770 mRNA 0.46 2 13621563 13625177

Neighbor

gene id symbol gene type direction distance location
XLOC_023952 NA coding upstream 57017 13558992 ~ 13562814 (+)
XLOC_023951 snrkb coding upstream 93512 13498188 ~ 13526319 (+)
XLOC_023950 znrf1 coding upstream 148541 13406069 ~ 13471290 (+)
XLOC_023949 si:ch211-194m7.5 coding upstream 292862 13321307 ~ 13326969 (+)
XLOC_023948 AL772241.1 coding upstream 338165 13281610 ~ 13281666 (+)
XLOC_023954 ccdc113 coding downstream 36883 13662606 ~ 13668229 (+)
XLOC_023955 usb1 coding downstream 51576 13677299 ~ 13686751 (+)
XLOC_023956 ccdc135 coding downstream 105819 13731542 ~ 13744806 (+)
XLOC_023957 C25H11orf49 coding downstream 165904 13791627 ~ 13799853 (+)
XLOC_023958 chst1 coding downstream 391886 14017609 ~ 14021111 (+)
XLOC_023973 CR762411.1 misc downstream 1592101 15217824 ~ 15218109 (+)
XLOC_023946 NA non-coding upstream 349295 13269659 ~ 13270536 (+)
XLOC_023943 CR384059.1 non-coding upstream 423089 13196626 ~ 13196742 (+)
XLOC_023940 NA non-coding upstream 601924 12981442 ~ 13017907 (+)
XLOC_023961 CR382374.1 non-coding downstream 508867 14134590 ~ 14134704 (+)
XLOC_023964 AL929309.1 non-coding downstream 805816 14431539 ~ 14433008 (+)
XLOC_023966 CR388067.1 non-coding downstream 1058510 14684233 ~ 14684347 (+)
XLOC_023969 NA non-coding downstream 1306259 14931982 ~ 15034584 (+)
XLOC_023970 NA non-coding downstream 1474815 15100538 ~ 15126304 (+)

Expression


Co-expression Network