G474537 (LOC106585852)


Basic Information

Item Value
gene id G474537
gene name LOC106585852
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11909197 ~ 11910150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU539509
GGGGTCGTAGAGCTCCAACTGGAACCTCTCTCCTGCCAGGCCCTCTCTGATCTTCCTCACAAGCAGGCGGCAGCGCTGCCAGCGATGCTGTGTGTCCGAGATAGTGTCGTCAACCACCAGGTACTTCAGCTGGCCCTCCTTGCAGCTGCTTGCAGCCTGCGGCCTGCGCTTCCCACTCTGCCTACGGACAAACCTGCTATTCAGCCGTTCTAGGAAGTGGGTGGACGTGGGGGAGGCCGAGGGCGTGGTCTCGTGGGAGGGGTTCCCAGTCAGCGCTGACGACGATAAGGCCGTCACTTCCTCCAGCGCCCCACCCATTCCCCTGTCCACCAGCCTGCTGGGCTGCAGGTCCTGAAGGGGCGGCGGGGGATTCTTAAAGAGACGGCACACGCTTTTCCTGATCTGGCTGACGGAGAAGTGTGTAATTTCAGCAGCAGTGAAGGAAGTCGAGGTGGGGATGTACCGTTCAGACGCAGGCCGCCCCTCCGACACAGTCACCTCCTCCAGGCTGCGGCTCTGGATGGGAGCTCGAGCTCGTAGCACCGGGTTGGCTGCCGAGCACCGGATGGGGTTCCCCTGCTCCCGGCTCACCGGCACGGGCTCCGTCTTTGGGGCCAGAACGCCAGACCGGCCCGCCTCCCTGTAGTCCAGGGCCTCGGAGGAGGTGGTGATGCGGAGCCGGCCCATCATGGGGGGAGGGGTCGATGCAGGGAGTTCTTTGGCCACCTCACTGTGGAAGTGCTGCTGGAACAGCTCACTGAACTGCTTGGAGAAGCTGTCCGGTGGGACGACATCTTGCACTGGCCACTCCCTGGCAAAGTTCCGGTAGTGGTTGGCTAGTTCTCGGGCCGTGGCAATGGCATGCAACTCGCAGAACTCCCTCCAGCCACGAGGCACTGCAACCAAAGCTGTGGTCGTAGCCTGATGGATAGTGTTACCATTCATTGCAGTAAC

Function

NR:

description
SH2B adapter protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU539509 True 954 lncRNA 0.62 1 11909197 11910150

Neighbor

gene id symbol gene type direction distance location
hsd17b4 hsd17b4 coding downstream 86587 11808873 ~ 11822610 (-)
LOC110525095 LOC106585847 coding downstream 187852 11629016 ~ 11721345 (-)
LOC110525260 cdo1 coding downstream 381125 11522292 ~ 11537417 (-)
LOC110525259 LOC106585845 coding downstream 436063 11470740 ~ 11473134 (-)
LOC110525257 fem1c coding downstream 439627 11463524 ~ 11469570 (-)
LOC110525267 LOC106585853 coding upstream 45067 11955217 ~ 11979397 (-)
LOC110525269 tle1 coding upstream 130377 12040527 ~ 12063287 (-)
rasef rasef coding upstream 193105 12103255 ~ 12139444 (-)
LOC110525271 LOC106585862 coding upstream 229468 12139618 ~ 12157601 (-)
frmd3 frmd3 coding upstream 254417 12164567 ~ 12244072 (-)
G474563 NA non-coding downstream 2338 11906644 ~ 11906859 (-)
G474561 NA non-coding downstream 8067 11900914 ~ 11901130 (-)
G474527 NA non-coding downstream 27997 11880898 ~ 11881200 (-)
G474152 NA non-coding downstream 61843 11847129 ~ 11847354 (-)
G474151 NA non-coding downstream 62261 11846733 ~ 11846936 (-)
G474571 NA non-coding upstream 6367 11916517 ~ 11916747 (-)
G474576 NA non-coding upstream 17234 11927384 ~ 11927623 (-)
G474577 NA non-coding upstream 18071 11928221 ~ 11928435 (-)
G474583 NA non-coding upstream 26133 11936283 ~ 11936547 (-)
G474535 NA non-coding upstream 38901 11949051 ~ 11949388 (-)
G474030 NA other downstream 166439 11742202 ~ 11742758 (-)
G473930 NA other downstream 307200 11601515 ~ 11601997 (-)
LOC110525252 ccser1 other downstream 524751 11280815 ~ 11390675 (-)
G472576 mpeg1 other downstream 1429351 10476409 ~ 10479846 (-)
G472539 NA other downstream 1533120 10373852 ~ 10376077 (-)
G474614 NA other upstream 119009 12029159 ~ 12029610 (-)
LOC110525279 LOC106585809 other upstream 514311 12310179 ~ 12555360 (-)
G475413 NA other upstream 1042102 12952252 ~ 12954051 (-)
LOC110525296 arrdc3 other upstream 1119235 13026299 ~ 13046348 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030849 sh2b3 coding NC_007116.7 CM002889.2 9556943 ~ 9625459 (-)