G484262


Basic Information

Item Value
gene id G484262
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20641190 ~ 20645048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU550385
AAAAGCATTGTATAAACATTTGTGCAGTGTAAATTAACTAAAAGTTATGGATTACTTTTGAAATAGTTTTGCACCAAACATGACGATTGTCACTTTCagcagcaaaaaaatatatatctcagAAGTAACATGAAATGTCTGTTAGTCGGTGACTGAGAAACTTACACGCAATGACATGTGAACAGTATACAGTTGCTACACTGCTTAAAACAAAAATCCGTAACGTTTAAGTACATTTCTGAAATAAAAGGATGTATGGCACCAGCGTTCTTCTTCCCTGAAGGAGGGCTTCATTCATCTATGGGTTAGATTGAGAGTACACTTCCCTTGTTCCTGTTCTGGCACCAAGGCAATCTCCCTACACATGTACACAGATAGTCAGCCTTCCAATTAATCACTCCAGTTTGACAAAACTGTGCATTAGCTGCACAAAAATAGGTCTACATTagcttattatcctacacacacacacattcacaaccaTGAAGGAATTCTCTCAGAACATTTGGGGACTTTGCTACCCTCACTGATGGATCAATATCTCACATTATGAACCAGCTTTACAAGATGTATTTCTCTGTGAGACAAACATTTCATGATACAAACTGAACATGTGTGCGATAACCCCCGTTGAATATTAAAAAATAAACTGTACTTAGAAATGAAACACGACCACAAAAAACGTACACTCGGGACAAATATAACAATGAACATATGGATACATAAATATTGTGTCAGATTAAAAAACTTTTATATAACATTTTACATAACCTTGTATTGCTGCGTCAATACATAACTCAGTTTTTCCCCTTCACATTAGAGATGCATTTTAACCCTTTGAAGTTCGCTTAATATTAATAATCCTTATCAAATTGTAAAAACTACATGTTTTGGCCTTGATGGGAGAAGCACATGACTCAAACACTGTTGTAAATACACTGCATTTGGAATGCATCCAAAACAGCAacttattccctatacagtgcaatACCTTTGACCAGGGGGCACTATCTTTGACCAGGgggcactacctttgaccagagcctgtgggccctggtcaaaagtaatgcactgtaAACGATATAGGGTGCAATTCCAGACGCAGCCATAGTATAGAAGGTAGGCAGACGGTGGTGGCGGCACAACCGTTATCTCTAAATTGAGTAAACACGAGCTGGAACCGATCTATGTAGGTTATCTTTGGTCAAGCACAGGGGAGCGAATGGACTTGAATGATTGGGTACAAAAGGTGAATGGGACTAGTCAGTCAGACAGTGGTAAGTATTGGCTCAGGTGTATGCGTGTGTGCACGCGCACACAACACAGTTCAGGTTTAAGGTCTTATAGATTCAAGTCAATAAGGATGGTAAGATATACTGTGATGATTAAACAAGTAAGCAATACATGCACAAGGCCATGATTGCTTGTATATAGATTGAGCTGAAAAGGCCTACTGTTTATTGGTCCTTGACATATAATATAACCAGGACCAAAGTTTGAGTAGATGCCCAAAGCCATGTCTGACAAACGTCCTTAATTGCACAACCAAACTCATgcttgaaaaaaaatatatatatataaaatttgTTTACTAGGGCATCCCATCTAGAACTCCAGAGTTTCCAGTTGAACAAACCCTACAAATCACCCACAGAAACAAGTATTACAAATATCAAAATGATCTCAATATGGACAATTCCTCATGTTACAATGTGTTGCTATCTATAGTTGTGTGCTAATCACAGTAAATGACAGCAAGCTTTGGGCATTGTATCCTGCTCAAATATTCTTCAATATTTAAAGAGTTGCTTCACAGAGACCAGACATAGCAATTCAGAAGTTGATACTGGTTTCTGTTGGAACAACCTTAAAAACAGAATATGAGCATGGATGGCTCATCCATATAAAAAATACAAGTCCATAGGTTATGGCAATTAATAGCAGCAATAAtagatacaaataaaaaaatcatattCAATGTACTGAAAAGCAAGTAACAAAGGCAAAGTGTCCATCTAGAATAACACCTCAGGAACCACATTGAAAAACAACCCTGGGGCAAACTACTGAAATACACAGAAGGACCCTTGCATTTTATATAACAACCCAAAAAATACAGGGCACGTTCTTTTTTTGGGGAAAGTGCAGGAATTTTCAAGTTGACAGTATTATGGCCTTAGTTCATTTTTTCCAGAAGCAACTGCCAAAAGGCTTGACACAACACAGAGACTAGTGACcaaaatggcaaaaaaaaaaatcaaaacatcAGACAAAGAGTGATTCAAGTGCCATGTTCGTCTGAATATCTACAGCTCCTTGGCAAGCCAGTTGACTCTGACATAACATGCACAGCAGAAGCGGTGTGCATGGCCCGATTGTTTATTCTACAATTCACCTGCGTTTTTTTTTTACGGCGCACCAGTCGATGTTTCTAACAGTGTTTCGTCTTTATGTGAAAACCTGGTCACCTTGTTATGAGGACTGTACTATCAATCCAAATTGTGCTTTCTCCAAGTATTGATGCAGACACACAAAGTGGGTCCACACTGATGTTAAAAAAATGGTGTCTTTGGCACACCTGTGACTACTTGCTGGATTAGGTCAGAGGTAGCCAGACATTTCCCCCTTGCATATGTACAACTATTAAGATATCCAGCTTTTTACCATATCAACAAAGAAACACAGAAAATTGTAAGGCAGAAAGTAGGTTCAAGTCTCCCTTATAAGTTTTGTGGGTATGTTTCTTTTCTTACAATTTCAATATGAGATGAAAGTTAAGGCCTTTCCTGAATGGGAAAGCAGCTATTTACTAATGCCTTATCTGAGGAAATGTCTAAGGTttagaaaaaaaatctgtctcaaACTAGTGTTGGGAAAGGTGAAGGGAAAGGGAAAAAGAGCTAAATGTCTAGTTTCTCAGTTGTCATACTGCATGGtaagacatgcacacacaaactgtCACAAATTCTATTTGATAACAACTTGGGTGTGTGCACTGACGGATTCATCCCTGGAAAATAAAATAAGTAGTCAATTTCTTTTTTCTTCAAAAAGGATATGCTAAGTACAGTTTTACTAGCAAAACCACTTATATTCTGAGTCAGTGAATACTCAGTTACAGGGAGAGAAGAATACCAGATGTTTTAATCTGGTGGCTGTTTGAGGTGACCTCACAAACACTGATACAAAGAAATGTTTCAGGACCCTCTAGTCTTCATTAAATCAGGTGAAGACTACCCATCAGTCAGTAGAACGCTGATAGTGACTGCTCAGTGGTTGTTATTAATTAGTGAGAATACTGCCTAATTTGATACTTATTCCCTCgcagaaaatactcaaaaaagCTTTGTCCTGGCTGTCCAAGTGTTCCTTCATGAACCCAGCACTGAGCccaacagaacagagacagaagtgacagtaggagtagtagtagtagtagtagacaggaGTTGTTGTTTTGCACTATGGCAGGCAGAAAGACCATGCTCAGCAGGATAGTCAAGAGCATCATTGAGATGAGCAGCATCTTGATTGACATGGACATTTATTGGGGTGGTTGCCCAAAAGTGAAAACCCCTGTCCGCACTGAAAAACCCTGCCTTGGTTATAATGCTCCGCCTGCCCCGCCACACAATGCAGCCTGCATCAACACTTCTGAGCCTCCACGGGAGACATGGCGATGTAGGAGCCGTTCCTCATTGGCTGGTTGGTATAGTTGTTTTCTGATGGTTCAACCTCTGGTTTGTCGCTGACTTGAGTGTAGGCCGTTTCATCTTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU550385 True 3779 lncRNA 0.39 2 20641190 20645048

Neighbor

gene id symbol gene type direction distance location
zgc:158260 LOC106585379 coding downstream 28589 20603073 ~ 20612601 (-)
LOC110525433 ccng2 coding downstream 49602 20584162 ~ 20591588 (-)
LOC110525430 LOC106585377 coding downstream 58185 20566415 ~ 20583005 (-)
zgc:152968 LOC106585374 coding downstream 89884 20537756 ~ 20551306 (-)
LOC110525421 LOC106585369 coding downstream 176903 20452244 ~ 20464287 (-)
LOC110525114 LOC106585382 coding upstream 11447 20656495 ~ 20670677 (-)
LOC110525438 LOC106585383 coding upstream 43096 20688144 ~ 20699512 (-)
LOC110525435 LOC106585385 coding upstream 68656 20713704 ~ 20726970 (-)
hint2 hint2 coding upstream 82951 20727999 ~ 20730282 (-)
malt1 LOC106585388 coding upstream 100304 20745352 ~ 20755400 (-)
G484249 NA non-coding downstream 9834 20624675 ~ 20631356 (-)
G484136 NA non-coding downstream 124955 20476734 ~ 20516235 (-)
G484137 yee9 non-coding downstream 161980 20477867 ~ 20479210 (-)
G484179 NA non-coding downstream 195349 20444161 ~ 20445841 (-)
G484400 NA non-coding upstream 335348 20980396 ~ 20980643 (-)
G484410 NA non-coding upstream 358997 21004045 ~ 21004375 (-)
G484411 NA non-coding upstream 359435 21004483 ~ 21004764 (-)
G484409 NA non-coding upstream 361968 21007016 ~ 21009082 (-)
G484423 NA non-coding upstream 379794 21024842 ~ 21025595 (-)
G484232 NA other downstream 32454 20588262 ~ 20608736 (-)
G484175 NA other downstream 201506 20439307 ~ 20439684 (-)
G483875 NA other downstream 705464 19933244 ~ 19935726 (-)
G483145 NA other downstream 920574 19710075 ~ 19720616 (-)
LOC110525458 LOC106585411 other upstream 474928 21115008 ~ 21121728 (-)
G484807 LOC106585304 other upstream 651532 21296580 ~ 21298173 (-)
G484895 LOC106585423 other upstream 786882 21431930 ~ 21434719 (-)
G485279 NA other upstream 1188500 21833548 ~ 21834360 (-)

Expression


Co-expression Network