XLOC_024173 (SLC15A5)


Basic Information

Item Value
gene id XLOC_024173
gene name SLC15A5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 28555584 ~ 28579761 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047923
TTAGTGAGGAGAAGCAGTCCGTAAACATTACCCAGAAACCTTAGTCAGGAGACGCAACGTGAGCTTTGGCGTGCTTGCATGGTTGTTAGGCATCCACAAGATTTCACAGGTTTGTGAGGAATTGCCTGACTAGTAAAATGGAGAAGGGGAGTCAGCCTTATCTGAGCATCACTTCCAAGGGAAGAACTCTGGAAGCAGCATGCTGCCCATAGATGTGTTTGATAGACCTGAACATCTCCTTCATGGGATCTGCAAGACTTCACATCCCGGGATGTTTAACAAGCCACACAAGGGGCGTAAGAAGTTGCAGGTGATTATATGTGTGCTTTTCGTGGAGCTTTTCGAGAGGTTCACCTTCTTTGGGATTGTCTGCAATATGATCCTTTTCTGCACCATCAAGCTGGGATACAGCAGCTACCAAGCTGCCATGGTGAACACGTGCTTTGTGGGAGCCTGCATACTTACGCCTGTTCTTGTGGGATGGTTTGCTGAGACGTGTTTGGGAAGGACAACGGTTCTCTGTTTTTGTGCACTTCTTCATTTCATCGgaACCGCTTTGCTTCCTGTCGTCGCGTTCCCTTTTGAGGATTTCTATATTAACACACATAATATAGTGCATCAGCTTGAGCCTCATGAGCAACACATACTATTCTACTTGGCACTGATTGCTGTGGCTCTTGGTATCGGTGGCATTCGAGCAATCCTCTGCCCAATGGCAGCCTATCACCTTCAAAGTTGTGACCAGCCCAAGCTATTGTCCTTCTTCAACTGGTTTTACTGGATGGTCAACCTGAACTCGACAGTAGTTTTTTTGGGAATTGCCTACATTCAGCAGTCAGTTGCCAAAAACCTGTGTTTTCTCATCCCTTTCACGTCTGTTCTCCTCGCCCTCATCGCCTTACACATGGTGCGCAACAAACTGACCTTCCGTCCCAAAAAAGGTAGTTCCTTGCTAACTACACTGGGAGTGTTCCTGAATTCTTTCAAAATGTGCTGCCTCCATTATCGCCATTTGAGTGGAGATGTTGCCAACTGGCTAGATCGTGCCAAGGAAAACAATGGAGGTTGTTACAGTGAAACCAGTGTGGAAAATGTCAAGATACTGGTCAAACTTTTCCCTCTCTTTGGACTTCAGCTTTTATATCGAGCTTGCATTACCCAGATTCCATCAGGCTATTATCTGCAGACCATGCATTCCAACCTAAAACTCAATGGCTTTCTCTTGCCTGTAGCAGTGATGAAGGTCATCAGTATATTGCCGGTGTTGATCTTAGCACCACTGCTGGAGCTTCTGAATACCTACTATCAGTCTCCAAAGAAAAAGCTGCCCTCGCCAGCAACATTCATAACTATGGGTCATGGTTGTGCAGCTCTCTCAGCACTGCTAGCAGGAATCTCAGAGATCCACAGGAAGGATTATCCAGAGGTGGAGCAGACACTATCAGGAAAGGTCCTGCAGGTGTCATCAATGACATGTTTCCAGCTCACGCCCCAGTACATTTTACTGGGAGTGGCAGAGGCCTTTGTGACTCCAGCATGCTCTCTCATAGCCTTCTGTCTGACTCCCAGCAATCTTAGAGGCGTCTCTTTGCATTTCCTAACCCTCTCGTACGGAGGTGGCTGCTTTCTGGGAGCTTTCCTCATTCACTTGCTTTATTTTGTGTCAGGAGGAAACTTCTACCCTAATAACCTCAGCAGTGGCAACATggagaggtttttttttattctggccaCATTGATGGCTATCAACACACTTGTGTTTTGGAGAATATCACAAAGCAGGTATGCAGATTTGAGCGTGGAGCTGAGTAGCGGTATAAAAGACAGTCCTCTgtcagagaaactcctgcagtaCAAGACCTGTCTGCGCTTTTATGACACAATGGAGCGCTCGGACACCTTGACGTCTATGGAAACTGTTTTGTGAATTCGCTGTATGTAAAAACTCTGTAATGCTGGCGTTACATGAGATTTAATCTGAATGAGTTTCATTGCTTGAGCAATAGCTGTAAATAAtgctatttaaatgttttcaaataaaacgtttt
>TCONS_00047924
gaACCGCTTTGCTTCCTGTCGTCGCGTTCCCTTTTGAGGATTTCTATATTAACACACATAATATAGTGCATCAGCTTGAGCCTCATGAGCAACACATACTATTCTACTTGGCACTGATTGCTGTGGCTCTTGGTATCGGTGGCATTCGAGCAATCCTCTGCCCAATGGCAGCCTATCACCTTCAAAGTTGTGACCAGCCCAAGCTATTGTCCTTCTTCAACTGGTTTTACTGGATGGTCAACCTGAACTCGACAGTAGTTTTTTTGGGAATTGCCTACATTCAGCAGTCAGTTGCCAAAAACCTGTGTTTTCTCATCCCTTTCACGTCTGTTCTCCTCGCCCTCATCGCCTTACACATGGTGCGCAACAAACTGACCTTCCGTCCCAAAAAAGGTACGTTTTTAAGTCaacaatcattttaaatgttatctgaaaaagaaaaaaaaatctaccttctctTCCTCAACAACATACATTTTTGTTCTGTGGAATAACAGGTAGTTCCTTGCTAACTACACTGGGAGTGTTCCTGAATTCTTTCAAAATGTGCTGCCTCCATTATCGCCATTTGAGTGGAGATGTTGCCAACTGGCTAGATCGTGCCAAGGAAAACAATGGAGGTTGTTACAGTGAAACCAGTGTGGAAAATGTCAAGATACTGGTCAAACTTTTCCCTCTCTTTGGACTTCAGCTTTTATATCGAGCTTGCATTACCCAGATTCCATCAGGCTATTATCTGCAGACCATGCATTCCAACCTAAAACTCAATGGCTTTCTCTTGCCTGTAGCAGTGATGAAGGTCATCAGTATATTGCCGGTGTTGATCTTAGCACCACTGCTGGAGCTTCTGAATACCTACTATCAGTCTCCAAAGAAAAAGCTGCCCTCGCCAGCAACATTCATAACTATGGGTCATGGTTGTGCAGCTCTCTCAGCACTGCTAGCAGGAATCTCAGAGATCCACAGGAAGGATTATCCAGAGGTGGAGCAGACACTATCAGGAAAGGTCCTGCAGGTGTCATCAATGACATGTTTCCAGCTCACGCCCCAGTACATTTTACTGGGAGTGGCAGAGGCCTTTGTGACTCCAGCATGCTCTCTCATAGCCTTCTGTCTGACTCCCAGCAATCTTAGAGGCGTCTCTTTGCATTTCCTAACCCTCTCGTACGGAGGTGGCTGCTTTCTGGGAGCTTTCCTCATTCACTTGCTTTATTTTGTGTCAGGAGGTAAACACACTTCACTCTTGGAAATGCCAAACTTTTGTGCAATTATGGATGTGAGCATGAACccacatttaaaatcaaaatgtatttacAGGAAACTTCTACCCTAATAACCTCAGCAGTGGCAACATggagaggtttttttttattctggccaCATTGATGGCTATCAACACACTTGTGTTTTGGAGAATATCACAAAGGTACACTATTGGCCTGTTTCAGGCATTAAACATGGCATAATGAAAAACATGTGTAGATGGATGAATCTTTACAAGGTTATTTTTTTAGCAGGTATGCAGATTTGAGCGTGGAGCTGAGTAGCGGTATAAAAGACAGTCCTCTgtcagagaaactcctgcagtaCAAGACCTGTCTGCGCTTTTATGACACAATGGAGCGCTCGGACACCTTGACGTCTATGGAAACTGTTTTGTGAATTCGCTGTATGTAAAAACTCTGTAATGCTGGCGTTACATGAGATTTAATCTGAATGAGTTTCATTGCTTGAGCAATAGCTGTAAATAAtgctatttaaatgttttcaaataaaacgttttttttatgATATACTACATGTTGTATGTTATTGAC
>TCONS_00047925
CTATCTACAATCCACAGGTTTTACTGGATGGTCAACCTGAACTCGACAGTAGTTTTTTTGGGAATTGCCTACATTCAGCAGTCAGTTGCCAAAAACCTGTGTTTTCTCATCCCTTTCACGTCTGTTCTCCTCGCCCTCATCGCCTTACACATGGTGCGCAACAAACTGACCTTCCGTCCCAAAAAAGGTACGTTTTTAAGTCaacaatcattttaaatgttatctgaaaaagaaaaaaaaatctaccttctctTCCTCAACAACATACATTTTTGTTCTGTGGAATAACAGGTAGTTCCTTGCTAACTACACTGGGAGTGTTCCTGAATTCTTTCAAAATGTGCTGCCTCCATTATCGCCATTTGAGTGGAGATGTTGCCAACTGGCTAGATCGTGCCAAGGAAAACAATGGAGGTTGTTACAGTGAAACCAGTGTGGAAAATGTCAAGATACTGGTCAAACTTTTCCCTCTCTTTGGACTTCAGCTTTTATATCGAGCTTGCATTACCCAGATTCCATCAGGCTATTATCTGCAGACCATGCATTCCAACCTAAAACTCAATGGCTTTCTCTTGCCTGTAGCAGTGATGAAGGTCATCAGTATATTGCCGGTGTTGATCTTAGCACCACTGCTGGAGCTTCTGAATACCTACTATCAGTCTCCAAAGAAAAAGCTGCCCTCGCCAGCAACATTCATAACTATGGGTCATGGTTGTGCAGCTCTCTCAGCACTGCTAGCAGGAATCTCAGAGATCCACAGGAAGGATTATCCAGAGGTGGAGCAGACACTATCAGGAAAGGTCCTGCAGGTGTCATCAATGACATGTTTCCAGCTCACGCCCCAGTACATTTTACTGGGAGTGGCAGAGGCCTTTGTGACTCCAGCATGCTCTCTCATAGCCTTCTGTCTGACTCCCAGCAATCTTAGAGGCGTCTCTTTGCATTTCCTAACCCTCTCGTACGGAGGTGGCTGCTTTCTGGGAGCTTTCCTCATTCACTTGCTTTATTTTGTGTCAGGAGGAAACTTCTACCCTAATAACCTCAGCAGTGGCAACATggagaggtttttttttattctggccaCATTGATGGCTATCAACACACTTGTGTTTTGGAGAATATCACAAAGGTACACTATTGGCCTGTTTCAGGCATTAAACATGGCATAATGAAAAACATGTGTAGATGGATGAATCTTTACAAGGTTATTTTTTTAGCAGGTATGCAGATTTGAGCGTGGAGCTGAGTAGCGGTATAAAAGACAGTCCTCTgtcagagaaactcctgcagtaCAAGACCTGTCTGCGCTTTTATGACACAATGGAGCGCTCGGACACCTTGACGTCTATGGAAACTGTTTTGTGAATTCGCTGTATGTAAAAACTCTGTAATGCTGGCGTTACATGAGATTTAATCTGAATGAGTTTCATTGCTTGAGCAATAGCTGTAAATAAtgctatttaaatgttttcaaataaaacgttttttttatgATATACTACATGTTGTATGTTATTGAC

Function

symbol description
slc15a5 Predicted to enable symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC15A5 (solute carrier family 15 member 5).

GO: NA

KEGG:

id description
ko02000 Transporters

Ensembl:

ensembl_id ENSDARG00000089974

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047923 False 2048 mRNA 0.46 9 28555584 28579727
TCONS_00047924 False 1817 mRNA 0.42 5 28563465 28579761
TCONS_00047925 True 1520 mRNA 0.42 5 28567381 28579761

Neighbor

gene id symbol gene type direction distance location
XLOC_024172 CR356235.1 coding upstream 51619 28503850 ~ 28503965 (+)
XLOC_024170 aass coding upstream 219478 28279577 ~ 28336106 (+)
XLOC_024171 CR752641.1 coding upstream 254136 28301324 ~ 28301448 (+)
XLOC_024169 fezf1 coding upstream 279493 28272908 ~ 28276091 (+)
XLOC_024168 cadps2 coding upstream 285631 28158352 ~ 28269953 (+)
XLOC_024174 tmem17 coding downstream 9908 28589669 ~ 28593540 (+)
XLOC_024175 cnot2 coding downstream 99090 28678851 ~ 28713510 (+)
XLOC_024176 slc41a2a coding downstream 192871 28772632 ~ 28808764 (+)
XLOC_024177 CR382363.1 coding downstream 233396 28813157 ~ 28815574 (+)
XLOC_024178 nfybb coding downstream 244191 28823952 ~ 28846945 (+)
XLOC_023973 CR762411.1 misc upstream 13337475 15217824 ~ 15218109 (+)
XLOC_024167 BX322610.1 non-coding upstream 594190 27961280 ~ 27961394 (+)
XLOC_024162 CR354392.1 non-coding upstream 938530 27616938 ~ 27617054 (+)
XLOC_024159 CR933757.1 non-coding upstream 1402837 27152633 ~ 27152747 (+)
XLOC_024181 BX323444.2 non-coding downstream 361821 28941582 ~ 28957144 (+)
XLOC_024182 NA non-coding downstream 381476 28961237 ~ 28961623 (+)
XLOC_024183 NA non-coding downstream 388472 28968233 ~ 28969082 (+)
XLOC_024184 NA non-coding downstream 392583 28972344 ~ 28972785 (+)

Expression


Co-expression Network