RNA id: TCONS_00047923


Basic Information

Item Value
RNA id TCONS_00047923
length 2048
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_024173
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 28555584 ~ 28579761 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGTGAGGAGAAGCAGTCCGTAAACATTACCCAGAAACCTTAGTCAGGAGACGCAACGTGAGCTTTGGCGTGCTTGCATGGTTGTTAGGCATCCACAAGATTTCACAGGTTTGTGAGGAATTGCCTGACTAGTAAAATGGAGAAGGGGAGTCAGCCTTATCTGAGCATCACTTCCAAGGGAAGAACTCTGGAAGCAGCATGCTGCCCATAGATGTGTTTGATAGACCTGAACATCTCCTTCATGGGATCTGCAAGACTTCACATCCCGGGATGTTTAACAAGCCACACAAGGGGCGTAAGAAGTTGCAGGTGATTATATGTGTGCTTTTCGTGGAGCTTTTCGAGAGGTTCACCTTCTTTGGGATTGTCTGCAATATGATCCTTTTCTGCACCATCAAGCTGGGATACAGCAGCTACCAAGCTGCCATGGTGAACACGTGCTTTGTGGGAGCCTGCATACTTACGCCTGTTCTTGTGGGATGGTTTGCTGAGACGTGTTTGGGAAGGACAACGGTTCTCTGTTTTTGTGCACTTCTTCATTTCATCGgaACCGCTTTGCTTCCTGTCGTCGCGTTCCCTTTTGAGGATTTCTATATTAACACACATAATATAGTGCATCAGCTTGAGCCTCATGAGCAACACATACTATTCTACTTGGCACTGATTGCTGTGGCTCTTGGTATCGGTGGCATTCGAGCAATCCTCTGCCCAATGGCAGCCTATCACCTTCAAAGTTGTGACCAGCCCAAGCTATTGTCCTTCTTCAACTGGTTTTACTGGATGGTCAACCTGAACTCGACAGTAGTTTTTTTGGGAATTGCCTACATTCAGCAGTCAGTTGCCAAAAACCTGTGTTTTCTCATCCCTTTCACGTCTGTTCTCCTCGCCCTCATCGCCTTACACATGGTGCGCAACAAACTGACCTTCCGTCCCAAAAAAGGTAGTTCCTTGCTAACTACACTGGGAGTGTTCCTGAATTCTTTCAAAATGTGCTGCCTCCATTATCGCCATTTGAGTGGAGATGTTGCCAACTGGCTAGATCGTGCCAAGGAAAACAATGGAGGTTGTTACAGTGAAACCAGTGTGGAAAATGTCAAGATACTGGTCAAACTTTTCCCTCTCTTTGGACTTCAGCTTTTATATCGAGCTTGCATTACCCAGATTCCATCAGGCTATTATCTGCAGACCATGCATTCCAACCTAAAACTCAATGGCTTTCTCTTGCCTGTAGCAGTGATGAAGGTCATCAGTATATTGCCGGTGTTGATCTTAGCACCACTGCTGGAGCTTCTGAATACCTACTATCAGTCTCCAAAGAAAAAGCTGCCCTCGCCAGCAACATTCATAACTATGGGTCATGGTTGTGCAGCTCTCTCAGCACTGCTAGCAGGAATCTCAGAGATCCACAGGAAGGATTATCCAGAGGTGGAGCAGACACTATCAGGAAAGGTCCTGCAGGTGTCATCAATGACATGTTTCCAGCTCACGCCCCAGTACATTTTACTGGGAGTGGCAGAGGCCTTTGTGACTCCAGCATGCTCTCTCATAGCCTTCTGTCTGACTCCCAGCAATCTTAGAGGCGTCTCTTTGCATTTCCTAACCCTCTCGTACGGAGGTGGCTGCTTTCTGGGAGCTTTCCTCATTCACTTGCTTTATTTTGTGTCAGGAGGAAACTTCTACCCTAATAACCTCAGCAGTGGCAACATggagaggtttttttttattctggccaCATTGATGGCTATCAACACACTTGTGTTTTGGAGAATATCACAAAGCAGGTATGCAGATTTGAGCGTGGAGCTGAGTAGCGGTATAAAAGACAGTCCTCTgtcagagaaactcctgcagtaCAAGACCTGTCTGCGCTTTTATGACACAATGGAGCGCTCGGACACCTTGACGTCTATGGAAACTGTTTTGTGAATTCGCTGTATGTAAAAACTCTGTAATGCTGGCGTTACATGAGATTTAATCTGAATGAGTTTCATTGCTTGAGCAATAGCTGTAAATAAtgctatttaaatgttttcaaataaaacgtttt

Function

GO: NA

KEGG:

id description
ko02000 Transporters

Ensembl:

ensembl_id ENSDART00000157046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047915 lncRNA upstream 286418 28253231 ~ 28269166 (+) False XLOC_024168
TCONS_00047906 lncRNA upstream 753481 27787994 ~ 27802103 (+) True XLOC_024163
TCONS_00047901 lncRNA upstream 1111968 27439858 ~ 27443616 (+) True XLOC_024160
TCONS_00049244 lncRNA upstream 1655777 26895253 ~ 26899807 (+) False XLOC_024156
TCONS_00047933 lncRNA downstream 233430 28813157 ~ 28815574 (+) False XLOC_024177
TCONS_00047934 lncRNA downstream 233435 28813162 ~ 28815574 (+) False XLOC_024177
TCONS_00047935 lncRNA downstream 233802 28813529 ~ 28815574 (+) False XLOC_024177
TCONS_00047937 lncRNA downstream 233819 28813546 ~ 28815574 (+) False XLOC_024177
TCONS_00047936 lncRNA downstream 233819 28813546 ~ 28815574 (+) False XLOC_024177
TCONS_00047918 mRNA upstream 219478 28279577 ~ 28336106 (+) False XLOC_024170
TCONS_00047920 mRNA upstream 222592 28282274 ~ 28332992 (+) True XLOC_024170
TCONS_00047919 mRNA upstream 268700 28279592 ~ 28286884 (+) False XLOC_024170
TCONS_00047917 mRNA upstream 279493 28272908 ~ 28276091 (+) True XLOC_024169
TCONS_00047913 mRNA upstream 285631 28158352 ~ 28269953 (+) False XLOC_024168
TCONS_00047926 mRNA downstream 9942 28589669 ~ 28593540 (+) True XLOC_024174
TCONS_00047927 mRNA downstream 99124 28678851 ~ 28713510 (+) False XLOC_024175
TCONS_00047928 mRNA downstream 99945 28679672 ~ 28693276 (+) False XLOC_024175
TCONS_00047929 mRNA downstream 99953 28679680 ~ 28683722 (+) False XLOC_024175
TCONS_00047930 mRNA downstream 113724 28693451 ~ 28698847 (+) True XLOC_024175
TCONS_00047922 other upstream 51619 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00047921 other upstream 254136 28301324 ~ 28301448 (+) True XLOC_024171
TCONS_00047914 other upstream 288960 28240091 ~ 28266624 (+) False XLOC_024168
TCONS_00047912 other upstream 594190 27961280 ~ 27961394 (+) True XLOC_024167
TCONS_00047903 other upstream 938530 27616938 ~ 27617054 (+) True XLOC_024162
TCONS_00047963 other downstream 1596744 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047974 other downstream 1737112 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047979 other downstream 2392117 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047980 other downstream 2401606 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048011 other downstream 4003013 32582740 ~ 32611439 (+) True XLOC_024226

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000055_04220373_04228785.mRNA True 1990 mRNA 0.46 11 CI01000055 4220373 ~ 4228906 (+)