RNA id: TCONS_00047914


Basic Information

Item Value
RNA id TCONS_00047914
length 539
RNA type nonsense_mediated_decay
GC content 0.47
exon number 5
gene id XLOC_024168
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 28158352 ~ 28269953 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACATCAGAAGATCTGTTTTGGAAGCTGGATGCTCTTCAGATGTTCGTCATGGACCTGCATTGGCCAGAGCCAGAGTTTGCCAAACATCTGGAGCAGAGGCTTAAACTGATGGCTAGCGACATGATGGAGGCCTGTGTCAAAAGGACCAAAGCTGCTTTTGACTCAAAAATGCAGAAGTCTTGCAAGTCCACAGATTTCCGCGTCGCCTTGTCTGTGTGCACAATGTTCAATGTTCTCATGGATGCCAAGAAGCAGTGCTCCAAGCTTTGTGTTCTTGACCAAGCAGTACCACTCCAAAATCGATGTCCTGATCGATGAGGCCTTTAAGGAAATGATCTCCTCCTTGGTCTCGAAGtttgCAGCTGTTTTAGATGGGGTGTTGTCGAAACTGTCACGATACGACGAGGGAACATTCTTCTCCTCCATCCTGTCTTTCACGAAACCTGGTATGGATCTAGCAGATACCTACATCACTTTTGTAAGGCAGAACCAGGACATTCTGCGAGACCGTGTGAATGACGAGATGTACACTGAGAAA

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:1990504 dense core granule exocytosis biological_process
GO:0045921 positive regulation of exocytosis biological_process
GO:0098978 glutamatergic synapse cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030903-1 Predicted to enable metal ion binding activity. Predicted to be involved in exocytosis and positive regulation of exocytosis. Predicted to act upstream of or within dense core granule exocytosis and synaptic vesicle exocytosis. Predicted to be active in glutamatergic synapse. Is expressed in hatching gland; nervous system; otic vesicle; pronephric duct; and trigeminal placode. Orthologous to human CADPS2 (calcium dependent secretion activator 2).

Ensembl:

ensembl_id ENSDART00000151866

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047906 lncRNA upstream 437988 27787994 ~ 27802103 (+) True XLOC_024163
TCONS_00047901 lncRNA upstream 796475 27439858 ~ 27443616 (+) True XLOC_024160
TCONS_00049244 lncRNA upstream 1340284 26895253 ~ 26899807 (+) False XLOC_024156
TCONS_00047889 lncRNA upstream 1340284 26895394 ~ 26899807 (+) False XLOC_024156
TCONS_00047883 lncRNA upstream 1455278 26782521 ~ 26784813 (+) True XLOC_024152
TCONS_00047933 lncRNA downstream 546533 28813157 ~ 28815574 (+) False XLOC_024177
TCONS_00047934 lncRNA downstream 546538 28813162 ~ 28815574 (+) False XLOC_024177
TCONS_00047935 lncRNA downstream 546905 28813529 ~ 28815574 (+) False XLOC_024177
TCONS_00047937 lncRNA downstream 546922 28813546 ~ 28815574 (+) False XLOC_024177
TCONS_00047936 lncRNA downstream 546922 28813546 ~ 28815574 (+) False XLOC_024177
TCONS_00047910 mRNA upstream 100514 27937585 ~ 28139577 (+) False XLOC_024166
TCONS_00047911 mRNA upstream 117674 27937789 ~ 28122417 (+) True XLOC_024166
TCONS_00047909 mRNA upstream 307368 27923846 ~ 27932723 (+) True XLOC_024165
TCONS_00047907 mRNA upstream 327718 27873671 ~ 27912373 (+) False XLOC_024164
TCONS_00047908 mRNA upstream 327927 27873836 ~ 27912164 (+) True XLOC_024164
TCONS_00047917 mRNA downstream 6284 28272908 ~ 28276091 (+) True XLOC_024169
TCONS_00047918 mRNA downstream 12953 28279577 ~ 28336106 (+) False XLOC_024170
TCONS_00047919 mRNA downstream 12968 28279592 ~ 28286884 (+) False XLOC_024170
TCONS_00047920 mRNA downstream 15650 28282274 ~ 28332992 (+) True XLOC_024170
TCONS_00047923 mRNA downstream 288960 28555584 ~ 28579727 (+) False XLOC_024173
TCONS_00047912 other upstream 278697 27961280 ~ 27961394 (+) True XLOC_024167
TCONS_00047903 other upstream 623037 27616938 ~ 27617054 (+) True XLOC_024162
TCONS_00047897 other upstream 1087344 27152633 ~ 27152747 (+) True XLOC_024159
TCONS_00047896 other upstream 1156647 27083330 ~ 27083444 (+) True XLOC_024158
TCONS_00047890 other upstream 1334289 26895675 ~ 26905802 (+) False XLOC_024156
TCONS_00047921 other downstream 34700 28301324 ~ 28301448 (+) True XLOC_024171
TCONS_00047922 other downstream 237226 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00047963 other downstream 1909847 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047974 other downstream 2050215 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047979 other downstream 2705220 30971844 ~ 30971960 (+) True XLOC_024207

Expression Profile

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