RNA id: TCONS_00047934



Basic Information


Item Value
RNA id TCONS_00047934
length 824
lncRNA type lincRNA
GC content 0.43
exon number 4
gene id XLOC_024177
representative False

Chromosome Information


Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 28813157 ~ 28815574 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATacccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcaaatgacaaggcttcaacgttgaaatgtggttgaaaataagtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatggtctgtatgttgaattaacgtcatggtttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttgggcttcacttaattacgaacacctgacctgcagtgcagcagaattcagaggtaagcagatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggcatcaagaacacgcagatggcctaaacctgtgtcagcctggacagactgcagttctgctactccatgccaaggcttttgtatggatgtcttgactgctactgtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttc

Function


GO:

id name namespace
GO:0048663 neuron fate commitment biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157316

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00047915 lncRNA upstream 543996 28253231 ~ 28269166 (+) False XLOC_024168
TCONS_00047906 lncRNA upstream 1011059 27787994 ~ 27802103 (+) True XLOC_024163
TCONS_00047901 lncRNA upstream 1369546 27439858 ~ 27443616 (+) True XLOC_024160
TCONS_00049244 lncRNA upstream 1913355 26895253 ~ 26899807 (+) False XLOC_024156
TCONS_00047944 lncRNA downstream 126008 28941582 ~ 28948156 (+) False XLOC_024181
TCONS_00049050 lncRNA downstream 132470 28948044 ~ 28957144 (+) False XLOC_024181
TCONS_00047945 lncRNA downstream 133815 28949389 ~ 28953654 (+) False XLOC_024181
TCONS_00047946 lncRNA downstream 137171 28952745 ~ 28956819 (+) True XLOC_024181
TCONS_00049051 lncRNA downstream 145663 28961237 ~ 28961623 (+) True XLOC_024182
TCONS_00047931 mRNA upstream 4398 28772632 ~ 28808764 (+) False XLOC_024176
TCONS_00047932 mRNA upstream 7936 28776562 ~ 28805226 (+) True XLOC_024176
TCONS_00047927 mRNA upstream 99652 28678851 ~ 28713510 (+) False XLOC_024175
TCONS_00047939 mRNA downstream 8378 28823952 ~ 28846945 (+) False XLOC_024178
TCONS_00047940 mRNA downstream 10083 28825657 ~ 28846336 (+) True XLOC_024178
TCONS_00047941 mRNA downstream 47086 28862660 ~ 28892882 (+) True XLOC_024179
TCONS_00047942 mRNA downstream 78041 28893615 ~ 28899697 (+) False XLOC_024180
TCONS_00047943 mRNA downstream 78057 28893631 ~ 28903894 (+) True XLOC_024180
TCONS_00047922 other upstream 309197 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00047921 other upstream 511714 28301324 ~ 28301448 (+) True XLOC_024171
TCONS_00047914 other upstream 546538 28240091 ~ 28266624 (+) False XLOC_024168
TCONS_00047912 other upstream 851768 27961280 ~ 27961394 (+) True XLOC_024167
TCONS_00047903 other upstream 1196108 27616938 ~ 27617054 (+) True XLOC_024162
TCONS_00047963 other downstream 1360897 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047974 other downstream 1501265 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047979 other downstream 2156270 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047980 other downstream 2165759 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048011 other downstream 3767166 32582740 ~ 32611439 (+) True XLOC_024226

Expression Profile


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