Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047915 |
| length | 758 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_024168 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 28158352 ~ 28269953 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006887 | exocytosis | biological_process |
| GO:0016079 | synaptic vesicle exocytosis | biological_process |
| GO:1990504 | dense core granule exocytosis | biological_process |
| GO:0045921 | positive regulation of exocytosis | biological_process |
| GO:0098978 | glutamatergic synapse | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030903-1 | Predicted to enable metal ion binding activity. Predicted to be involved in exocytosis and positive regulation of exocytosis. Predicted to act upstream of or within dense core granule exocytosis and synaptic vesicle exocytosis. Predicted to be active in glutamatergic synapse. Is expressed in hatching gland; nervous system; otic vesicle; pronephric duct; and trigeminal placode. Orthologous to human CADPS2 (calcium dependent secretion activator 2). |
| ensembl_id | ENSDART00000152036 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00047906 | lncRNA | upstream | 451128 | 27787994 ~ 27802103 (+) | True | XLOC_024163 |
| TCONS_00047901 | lncRNA | upstream | 809615 | 27439858 ~ 27443616 (+) | True | XLOC_024160 |
| TCONS_00049244 | lncRNA | upstream | 1353424 | 26895253 ~ 26899807 (+) | False | XLOC_024156 |
| TCONS_00047889 | lncRNA | upstream | 1353424 | 26895394 ~ 26899807 (+) | False | XLOC_024156 |
| TCONS_00047883 | lncRNA | upstream | 1468418 | 26782521 ~ 26784813 (+) | True | XLOC_024152 |
| TCONS_00047933 | lncRNA | downstream | 543991 | 28813157 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047934 | lncRNA | downstream | 543996 | 28813162 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047935 | lncRNA | downstream | 544363 | 28813529 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047937 | lncRNA | downstream | 544380 | 28813546 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047936 | lncRNA | downstream | 544380 | 28813546 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047910 | mRNA | upstream | 113654 | 27937585 ~ 28139577 (+) | False | XLOC_024166 |
| TCONS_00047911 | mRNA | upstream | 130814 | 27937789 ~ 28122417 (+) | True | XLOC_024166 |
| TCONS_00047909 | mRNA | upstream | 320508 | 27923846 ~ 27932723 (+) | True | XLOC_024165 |
| TCONS_00047907 | mRNA | upstream | 340858 | 27873671 ~ 27912373 (+) | False | XLOC_024164 |
| TCONS_00047908 | mRNA | upstream | 341067 | 27873836 ~ 27912164 (+) | True | XLOC_024164 |
| TCONS_00047917 | mRNA | downstream | 3742 | 28272908 ~ 28276091 (+) | True | XLOC_024169 |
| TCONS_00047918 | mRNA | downstream | 10411 | 28279577 ~ 28336106 (+) | False | XLOC_024170 |
| TCONS_00047919 | mRNA | downstream | 10426 | 28279592 ~ 28286884 (+) | False | XLOC_024170 |
| TCONS_00047920 | mRNA | downstream | 13108 | 28282274 ~ 28332992 (+) | True | XLOC_024170 |
| TCONS_00047923 | mRNA | downstream | 286418 | 28555584 ~ 28579727 (+) | False | XLOC_024173 |
| TCONS_00047912 | other | upstream | 291837 | 27961280 ~ 27961394 (+) | True | XLOC_024167 |
| TCONS_00047903 | other | upstream | 636177 | 27616938 ~ 27617054 (+) | True | XLOC_024162 |
| TCONS_00047897 | other | upstream | 1100484 | 27152633 ~ 27152747 (+) | True | XLOC_024159 |
| TCONS_00047896 | other | upstream | 1169787 | 27083330 ~ 27083444 (+) | True | XLOC_024158 |
| TCONS_00047890 | other | upstream | 1347429 | 26895675 ~ 26905802 (+) | False | XLOC_024156 |
| TCONS_00047921 | other | downstream | 32158 | 28301324 ~ 28301448 (+) | True | XLOC_024171 |
| TCONS_00047922 | other | downstream | 234684 | 28503850 ~ 28503965 (+) | True | XLOC_024172 |
| TCONS_00047963 | other | downstream | 1907305 | 30176471 ~ 30176559 (+) | True | XLOC_024196 |
| TCONS_00047974 | other | downstream | 2047673 | 30316839 ~ 30337989 (+) | True | XLOC_024200 |
| TCONS_00047979 | other | downstream | 2702678 | 30971844 ~ 30971960 (+) | True | XLOC_024207 |
