Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047901 |
| length | 817 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 3 |
| gene id | XLOC_024160 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 27405738 ~ 27492004 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051974 | negative regulation of telomerase activity | biological_process |
| GO:0016233 | telomere capping | biological_process |
| GO:0032210 | regulation of telomere maintenance via telomerase | biological_process |
| GO:0000723 | telomere maintenance | biological_process |
| GO:0000783 | nuclear telomere cap complex | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0043047 | single-stranded telomeric DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0010521 | telomerase inhibitor activity | molecular_function |
| GO:0098505 | G-rich strand telomeric DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110324-1 | Predicted to enable G-rich strand telomeric DNA binding activity and telomerase inhibitor activity. Predicted to be involved in negative regulation of telomerase activity; regulation of telomere maintenance via telomerase; and telomere capping. Predicted to act upstream of or within telomere maintenance. Predicted to be located in chromosome, telomeric region and nucleus. Predicted to be part of nuclear telomere cap complex. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Human ortholog(s) of this gene implicated in familial melanoma and high grade glioma. Orthologous to human POT1 (protection of telomeres 1). |
| ensembl_id | ENSDART00000154522 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049244 | lncRNA | upstream | 540051 | 26895253 ~ 26899807 (+) | False | XLOC_024156 |
| TCONS_00047889 | lncRNA | upstream | 540051 | 26895394 ~ 26899807 (+) | False | XLOC_024156 |
| TCONS_00047880 | lncRNA | upstream | 655045 | 26781731 ~ 26784813 (+) | False | XLOC_024152 |
| TCONS_00047883 | lncRNA | upstream | 655045 | 26782521 ~ 26784813 (+) | True | XLOC_024152 |
| TCONS_00047881 | lncRNA | upstream | 655430 | 26782373 ~ 26784428 (+) | False | XLOC_024152 |
| TCONS_00047906 | lncRNA | downstream | 344378 | 27787994 ~ 27802103 (+) | True | XLOC_024163 |
| TCONS_00047915 | lncRNA | downstream | 809615 | 28253231 ~ 28269166 (+) | False | XLOC_024168 |
| TCONS_00047933 | lncRNA | downstream | 1369541 | 28813157 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047934 | lncRNA | downstream | 1369546 | 28813162 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047935 | lncRNA | downstream | 1369913 | 28813529 ~ 28815574 (+) | False | XLOC_024177 |
| TCONS_00047894 | mRNA | upstream | 202535 | 26921480 ~ 27237323 (+) | False | XLOC_024157 |
| TCONS_00047895 | mRNA | upstream | 203043 | 26923193 ~ 27236815 (+) | True | XLOC_024157 |
| TCONS_00047892 | mRNA | upstream | 526584 | 26895962 ~ 26913274 (+) | False | XLOC_024156 |
| TCONS_00047891 | mRNA | upstream | 526584 | 26895962 ~ 26913274 (+) | False | XLOC_024156 |
| TCONS_00047893 | mRNA | upstream | 527670 | 26901149 ~ 26912188 (+) | True | XLOC_024156 |
| TCONS_00047902 | mRNA | downstream | 49828 | 27493444 ~ 27500288 (+) | True | XLOC_024161 |
| TCONS_00047904 | mRNA | downstream | 300677 | 27744293 ~ 27812810 (+) | False | XLOC_024163 |
| TCONS_00047905 | mRNA | downstream | 300719 | 27744335 ~ 27788200 (+) | False | XLOC_024163 |
| TCONS_00047907 | mRNA | downstream | 430055 | 27873671 ~ 27912373 (+) | False | XLOC_024164 |
| TCONS_00047908 | mRNA | downstream | 430220 | 27873836 ~ 27912164 (+) | True | XLOC_024164 |
| TCONS_00047897 | other | upstream | 287111 | 27152633 ~ 27152747 (+) | True | XLOC_024159 |
| TCONS_00047896 | other | upstream | 356414 | 27083330 ~ 27083444 (+) | True | XLOC_024158 |
| TCONS_00047890 | other | upstream | 534056 | 26895675 ~ 26905802 (+) | False | XLOC_024156 |
| TCONS_00047888 | other | upstream | 572019 | 26867723 ~ 26867839 (+) | True | XLOC_024155 |
| TCONS_00047862 | other | upstream | 2233105 | 25206625 ~ 25206753 (+) | True | XLOC_024136 |
| TCONS_00047903 | other | downstream | 173322 | 27616938 ~ 27617054 (+) | True | XLOC_024162 |
| TCONS_00047912 | other | downstream | 517664 | 27961280 ~ 27961394 (+) | True | XLOC_024167 |
| TCONS_00047914 | other | downstream | 796475 | 28240091 ~ 28266624 (+) | False | XLOC_024168 |
| TCONS_00047921 | other | downstream | 857708 | 28301324 ~ 28301448 (+) | True | XLOC_024171 |
| TCONS_00047922 | other | downstream | 1060234 | 28503850 ~ 28503965 (+) | True | XLOC_024172 |
