RNA id: TCONS_00047930


Basic Information

Item Value
RNA id TCONS_00047930
length 563
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_024175
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 28678851 ~ 28713510 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAAAACGTGACAGGAATAGATCTCTCAGAATTCCCAGCACTTGCAGACAGAAGTCGGAGGGAGGGAAATGGCAACCCTACACCGTTGCATAATCCACTGGCTGGAAGGGCGCCCTATGacaaTATCCCTCAAAGGTTtgttaaaatgtgtttgtgtgcagttgGAATGGTCACAAAGCCATCGAACGAACAGTCGCAGGACTTTTCAATTCACAACGAAGACTTCCCAGCCCTGCCTGGCCCCAACTATAAGGACCCGACATTAAGCACGGATGAAAGCAAATCAAGCTTAAACTCTTCAGGCAAAGGCAGCTCGAGTGCAGATGGACCCAAGTTTCCCGGTGACAAGACATCATCAGCACAGAATAACAACCAGCAGAAGAAAGGGATCCAGGTGTTGCCTGACGGCAAGGTAACGAACATTCCCTCAGGAATGGTGACAGATCAGTTTGGAATGATTGGACTCTTGACATTCATTAGGGCAGCTGAGACAGATCCTGGGATGGTTCACCTAGCCTTAGGAAGTGACCTAACAACGCTAGGACTCAACCTTAACTCTCCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0017148 negative regulation of translation biological_process
GO:2000036 regulation of stem cell population maintenance biological_process
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0000932 P-body cellular_component
GO:0030015 CCR4-NOT core complex cellular_component
GO:0004535 poly(A)-specific ribonuclease activity molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-070410-70 Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening and regulation of stem cell population maintenance. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Orthologous to human CNOT2 (CCR4-NOT transcription complex subunit 2).

Ensembl:

ensembl_id ENSDART00000148366

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047915 lncRNA upstream 424285 28253231 ~ 28269166 (+) False XLOC_024168
TCONS_00047906 lncRNA upstream 891348 27787994 ~ 27802103 (+) True XLOC_024163
TCONS_00047901 lncRNA upstream 1249835 27439858 ~ 27443616 (+) True XLOC_024160
TCONS_00049244 lncRNA upstream 1793644 26895253 ~ 26899807 (+) False XLOC_024156
TCONS_00047933 lncRNA downstream 114310 28813157 ~ 28815574 (+) False XLOC_024177
TCONS_00047934 lncRNA downstream 114315 28813162 ~ 28815574 (+) False XLOC_024177
TCONS_00047935 lncRNA downstream 114682 28813529 ~ 28815574 (+) False XLOC_024177
TCONS_00047937 lncRNA downstream 114699 28813546 ~ 28815574 (+) False XLOC_024177
TCONS_00047936 lncRNA downstream 114699 28813546 ~ 28815574 (+) False XLOC_024177
TCONS_00047928 mRNA upstream 175 28679672 ~ 28693276 (+) False XLOC_024175
TCONS_00047929 mRNA upstream 9729 28679680 ~ 28683722 (+) False XLOC_024175
TCONS_00047926 mRNA upstream 99911 28589669 ~ 28593540 (+) True XLOC_024174
TCONS_00047924 mRNA upstream 113690 28563465 ~ 28579761 (+) False XLOC_024173
TCONS_00047925 mRNA upstream 113690 28567381 ~ 28579761 (+) True XLOC_024173
TCONS_00047931 mRNA downstream 73785 28772632 ~ 28808764 (+) False XLOC_024176
TCONS_00047932 mRNA downstream 77715 28776562 ~ 28805226 (+) True XLOC_024176
TCONS_00047939 mRNA downstream 125105 28823952 ~ 28846945 (+) False XLOC_024178
TCONS_00047940 mRNA downstream 126810 28825657 ~ 28846336 (+) True XLOC_024178
TCONS_00047941 mRNA downstream 163813 28862660 ~ 28892882 (+) True XLOC_024179
TCONS_00047922 other upstream 189486 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00047921 other upstream 392003 28301324 ~ 28301448 (+) True XLOC_024171
TCONS_00047914 other upstream 426827 28240091 ~ 28266624 (+) False XLOC_024168
TCONS_00047912 other upstream 732057 27961280 ~ 27961394 (+) True XLOC_024167
TCONS_00047903 other upstream 1076397 27616938 ~ 27617054 (+) True XLOC_024162
TCONS_00047963 other downstream 1477624 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047974 other downstream 1617992 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047979 other downstream 2272997 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047980 other downstream 2282486 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048011 other downstream 3883893 32582740 ~ 32611439 (+) True XLOC_024226

Expression Profile

//