G488697


Basic Information

Item Value
gene id G488697
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24921185 ~ 24921431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555482
ATTCCCACAAGGACCCAAGGAGCTTTCTTTTTTCACCCTGTGCTTCTTTCATCCACAGTTAAATATGTAAATAAAATGTCTAAAGTCATTCTTCAAAAGGGAACAAAAGGAAAAAGGGAGCTGAGGGAAAAGACAGCCAGAAAATTCCTCCAATTCTCCATAACATTAGCCAGAGGGGGGCCAGCTTGTAGCCAGAGCCTAGCAGCAGGGGAGCCAGCTCCATAGAATCACACATCTTAAatcccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555482 True 247 lncRNA 0.44 1 24921185 24921431

Neighbor

gene id symbol gene type direction distance location
LOC110525589 LOC106585529 coding downstream 3333 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 36180 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 206095 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 286827 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 341812 24578705 ~ 24579373 (-)
LOC110525591 LOC106579906 coding upstream 251430 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 527588 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 721801 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 782743 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 1057523 25978954 ~ 26067633 (-)
G488694 NA non-coding downstream 1749 24919133 ~ 24919436 (-)
G488693 NA non-coding downstream 13743 24907224 ~ 24907442 (-)
G488646 NA non-coding downstream 78218 24839999 ~ 24842967 (-)
G488645 NA non-coding downstream 82099 24837596 ~ 24839086 (-)
G488620 NA non-coding downstream 117175 24803566 ~ 24804010 (-)
G488700 NA non-coding upstream 2248 24923679 ~ 24923888 (-)
G488709 NA non-coding upstream 14901 24936332 ~ 24936571 (-)
G488710 NA non-coding upstream 16868 24938299 ~ 24938515 (-)
G488711 NA non-coding upstream 17292 24938723 ~ 24939248 (-)
G488715 NA non-coding upstream 26014 24947445 ~ 24947827 (-)
G488386 NA other downstream 567362 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1203402 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1335631 23582127 ~ 23587892 (-)
G487016 NA other downstream 1529123 23390017 ~ 23392062 (-)
G489038 NA other upstream 184774 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 575532 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1358276 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1534301 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1625791 26481087 ~ 26551627 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035925 NA non-coding NC_007119.7 CM002892.2 44275846 ~ 44308036 (+)
grasscarp (Ctenopharyngodon idella) G227053 NA non-coding CI01000053 null 3734124 ~ 3745623 (-)