XLOC_024202


Basic Information

Item Value
gene id XLOC_024202
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 30360507 ~ 30362895 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049264
cagtcatcttcgttttgaagaatcccccttccacccctacccctactcctcctcctcctcctttcctggtGTGGTCTTTTCCACAGTGgcccagtagttagcactgttgcttcacagcaagaacgtcactagttcttaccaagccagctgatgtttctgtgcggagtttgcacattctccccgtgctcatgtgggtttcctctggttttcttccaaccgtccaaaaacatgcaactcaaGTTAATTGACTTATCCAAATCGGTGCGAATGAAATATTCAttaaaggcggcaacaccaaagctccaaaaacataaatttatttaattaaaaaagctgACACGAAGCGTGTAACGTTTCGGGCCACACGGCTCCTCATCAGACAGTGTTCATCACAAGCAGATGCTCCTttacacttccggatcacatgataTCCTCTcgcatatatgtccacatatacctacatacatatgtatacatacatacacaatcattcatatacaaaacaggtgtcaaactcagttccaaaagggccgcagctctgcacagtttagtcccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacccacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcgaccctccaggaattgagtttgacacccctgccctaaacaATTGGAAAGGGGCTTCATCGGAGAATATAACTGTGCCCCAGTCCTTAGCAGTCCATTCGCAAATCTTTTAGCAGAAGATTAATCTGTCCCTGatggttttttttgtttttttgtttggaaAGAAGTGGCTTCTTTGCTGCCCTTCTTGACACCAGGTCATCTTCCAAAAGTCTTCGTCTCACAATGCGTGCAGATGCGCTCACACCTACCTGCTGCCATTCCTGAGCAAGCTTTGCACTGGTGGCATTCCCGCATCTGAATCCTCTTTAGGAGACAATCCTGGCACTTGCTGGACTTTCTTGGATGCCCTGAAGCCTTCTTAACAAGAATTGAACCTCTTTCCTTGAAGTTTTTGATGATCCTATAAATTGTTGATTTAGGTGCAATCTTAGTAGCCACAACATCCTTGCCTGTGATGGCTGCACACTTTTCTTTGCAGGTCACCATGGTTAACAATGGAAGAACAATGATTTCAAGCATCACCCTCCTTTTAACAAGTCAAGTCTGCCATTCTAACCCAATCAGCCTGACATAATGATCTCCAGCCTTGTGCTCGTCAACATTCTCACCTGAGTTAACAAGACGATTACTGAAATGATCTCAGCAGGTCCTTTAATGACAGCAATGAAATGCagtggaaagtttttttttttttttttcaggattaaGTTCATTTTAATGGCAACGAAGGAGTATGCAATTCATCTGATCACTTATCATAACATTCTGGAGTATATGTAAATTGCTATTATAAAAACTTAAGCAGCAActtttcaaattttaaatattgGCCATCACTGTAGGGGATCATCTGTTAGTATCTAGCCTGGAGCGCCATCTGGTGTACCTTTGAAGCTAAGAAGGAAACAAATGATGAATTATTGGATGAATCTACAAGGGCAGGAAATAAATAGTAATCCAGCATAAAGAGTTCTTATTCCGAGTTGGGAATATGGAAAAAACAAAACCGTTTTTGGAAGAGAAAGCATGGAAGTAGCTTAGGAGATGGAATTAATTGATAAAGGTTTAAACAAAGCAGTACCAATAGCCACACCACCACCATGGTTATATCCTTTAGGATTAGTTAATTTGGATTTACTGGACAATAGTCAGGACTATAGAAACATCGCTAATATTTCAGGAATAATTGAAgataaaattatgacaaaatataAAGAATGTACTGAAGTATACACAGATGGGTCAGTAAATTTGGAGTCGGGCAGAACTGGGTTTGGTGTATTTGTACCAAAATTAGACATATCAATTAAGAAAAGAACAGATTACctaacaatatatacagtagagCTGATGGCTATAATTGCTGTGCTGTATTGGACAGAGGAAAGTGGCTTAAAGAAAGTGGTTATATGTGtatatgaagttttttttttattttattttattttattgaaagcGAAAACGTCTTTACAGGTAGCGAAACGGCTCAATTAGCAAGTCACATGTTTACATTTGATGTTAATCGactatttgaaaaatgtaaatcacTTGTCGATTCCATAATCAGAATATTGTCAATAGTTGTATTGCTGTCGTCCATGTAGATGCGAAAATCAAAATCTCAAAGCGCAAATTCGTGACTAGTTTGCACACGTTGCATTCGAATTCAGGGAGGTTTGCAGCTTTAGCCTTCGTTTGTTCTCAATAAAATGGAGGGGAAAAAAA

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049264 True 2389 lncRNA 0.40 1 30360507 30362895

Neighbor

gene id symbol gene type direction distance location
XLOC_024201 NA coding upstream 15581 30342200 ~ 30344926 (+)
XLOC_024200 ticrr coding upstream 22518 30316839 ~ 30337989 (+)
XLOC_024199 NA coding upstream 60845 30298377 ~ 30299662 (+)
XLOC_024198 alkbh3 coding upstream 95711 30233638 ~ 30264796 (+)
XLOC_024197 hsd17b12a coding upstream 129948 30196039 ~ 30230559 (+)
XLOC_024203 pdcd2l coding downstream 79494 30442389 ~ 30454772 (+)
XLOC_024204 banp coding downstream 97483 30460378 ~ 30550350 (+)
XLOC_024205 CR753816.2 coding downstream 436341 30799236 ~ 30805004 (+)
XLOC_024206 CR381618.1 coding downstream 552283 30915178 ~ 31040725 (+)
XLOC_024207 CR381618.2 coding downstream 608949 30971844 ~ 30971960 (+)
XLOC_023973 CR762411.1 misc upstream 15142398 15217824 ~ 15218109 (+)
XLOC_024195 NA non-coding upstream 166432 30171915 ~ 30194075 (+)
XLOC_024196 dre-mir-129-4 non-coding upstream 183948 30176471 ~ 30176559 (+)
XLOC_024192 NA non-coding upstream 314709 30038091 ~ 30045798 (+)
XLOC_024208 CR381618.3 non-coding downstream 618438 30981333 ~ 30981447 (+)
XLOC_024212 NA non-coding downstream 886103 31248998 ~ 31258883 (+)
XLOC_024216 NA non-coding downstream 1025222 31388117 ~ 31395681 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1976573 LOC100194703 unknown NC_048589.1 CM023243.3 34480030 ~ 34480897 (+)