XLOC_024204 (banp)


Basic Information

Item Value
gene id XLOC_024204
gene name banp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 30460378 ~ 30550350 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047976
AATGCTCCGGCTTTTCTCTCGCGAGGAAGGACGCCATTATCGGAATACTCACAAACAACACGAGAATTCATCATTCACACGGTTTGAATGATGTCAGAGCAAGATTTAGTGGAAATAGTCCAGATTGCAGTGGCGGATTTAAATCATGAAGGACACCAAACAGATGTTCTGGAGAATAATGAAGACTCTGATCAACCAGGGAGGAAACGAGCAAGAATTGAGATCAGTCAAGAAACATCTATCAAGTCGATGTTGATATCCATCAGTCAGGCGATCTGCCAGCGGCTGGACAGTATGGAAGCAAAGCTGCAGGTTCTTGAGGTGACCTGTCGAGGTTTAGTGGAGAAACTGGACACAGTGATGGGCAAGAACCAGTCAACGATTCAAGTACCCATGGTGTCCGGGTCCCCATTCGGAGCCACTCAGACTTGTGACAAAGTACGCTGTGTTGTTCCCCAGACAAATGTCATAGTAAGTGGAGACAGGGCGAAGACGGAGGAGACTTCGCCACGCACATCAGACTCTTTAGAAAATCTGCTCAGCAATACTGTAGGGCGAGGGAGACAGAAAACCATAGTACTGAAGGTTCCAGTTCAGGAGGAGATTCAGGATGATCAGGAAAGTGGTTCGGAAACGAGCGATTCGGTGTCCAACAGCGGCCAGCCTCAGAATAACAACAATGTAACGCTCATCACTCTTAACTCAGAGGAGGATTATCCAACAGGAACGTGGCTCGGTGATGAAAACAACCCTGAGATGCGCGTCCGCTGCCCTGTTTCTCCAGCCGACATGTTGCACATCAGCACTAACTGCCGCACGGCGGAGAAAATGGCGCTGACGCTACTGGACTACCTGTTCCACCGTGAAGTTCAGGCTGTCTCCAACCTCTCTGGACAGGGCAAGCATGGCAAAAAACAGCTCGACCCACTCATGATCTACGGTATTCGATGTCACCTGTTCTTCAAGTTCGCCATTACCGAGTCCGACTGGTATCGCATTAAGCAGAGCATCGATTCCAAATGTCGTACTGCATGGCGCAGGAAACAGCGAGGACAGAGTTTGGCAGTTAAGAGTTTCTCACGCCGGACCCCTGCGTCGCAGAGCAGCTCAGATGGAGTCTCGGCTGCAGAAACATCGGCTATCGAGACCTCTACCCAGCAGGCCTTGCACTACGCTCTGGCTGGAGCCACGCAACAAGTCCAGATACACCGTATAGGAGAAGACGGACAGGTGCAAGTTATACCACAGGGACACCTTCACATCGCTCAGGTGCCACAGGGGGAACAGGTGCAGATCACGCAGGACAGCGAGGGCAACCTACAGATCCACCAGGTGCACGTTGGGCAAGATGGCCAGGTAAACGTTCTAAGAGGACCGCAGCTCATTGCAGTAGCTTCGACAGATGGGACTGGTGGGGTCGATGCATCTCCTCTCCAGGCCAATGATATTCAGGTGCAATACGTGCAGCTGGGAACAGTGACCGACCACACTGGTGCAGTACAGGCTGAAGCTCTGACTCCGGCACTGCAGGCGGAGATGGATGTAAAGGAGGCCATTCAGCTCCAGCAAGCCGAGAACGGAGAGGTGGTTCAGATCCAGATGCCAGGCACTTGAGTCGCTcgcaaaaacgtaaaaaacgatGATATTCGGCTCTAGCGCCAGTGAGACGGCCAAACCGAGGAGCGCGGCCAATCAAACTCACATTCAAAACCCAAACCACCACCGTCAGTCAACAACTATTGACTAGCTCCAACTAAAACAAAGGCAATTTGTCGTAATTTGTCAGTTCGTTTGGAAAACACTGGTCTTCCTGCACCAGTCGAAACCATCCGGGCTGGTTAGTAATGATTAAGCAATGCTAGCTTTTCTCTTCGGGTCAATCTGAAGTAAGTCATACGCAAAGATTGAGCTTGTTTACTTAGAGATTTGAGCAGGCATTTTCTTAAACTACCCATGTATCCCCAATGTGAGCGTTACACCTAGTAGACTTTGCTTATCCAGTTTGATGAATTCGCAGGACAGTAATATTAGCTTCGGTTCATAATCCAAGACTTTTCCGTTATACTATCCtattttttttggtgtgtgtgagtgtgtttgtattgGTGAAGATCTAGGGGTATTATTAAGGGCTGCCCCTGTTTCATTTATCAATAATCAATTTGTTTTCATAATAATGGTTAGTCGAAATATTattatcttttgttttgttttgtatagcTTTATtgtacagaacaaaaaaaaaaatactactgaAAGTTTTGTGGAGCTTTTGTAGAGCAGTTTACTAATACACAGGATAAATACGATGACGGTGCAACTGTGTTAATGTAGTATATGAAATATGTACCTtttcttataaatatatatatttgtgtatgaaGGACTTGTTCAAATTGAATAAATGACCCTTGTTTCCA

Function

symbol description
banp Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of protein catabolic process and protein localization to nucleus. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Orthologous to human BANP (BTG3 associated nuclear protein).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0034504 protein localization to nucleus biological_process
GO:0042177 negative regulation of protein catabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-54 Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of protein catabolic process and protein localization to nucleus. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Orthologous to human BANP (BTG3 associated nuclear protein).

Ensembl:

ensembl_id ENSDARG00000017562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047976 True 2420 mRNA 0.47 13 30460378 30550350

Neighbor

gene id symbol gene type direction distance location
XLOC_024203 pdcd2l coding upstream 5606 30442389 ~ 30454772 (+)
XLOC_024202 NA coding upstream 97483 30360507 ~ 30362895 (+)
XLOC_024201 NA coding upstream 115452 30342200 ~ 30344926 (+)
XLOC_024200 ticrr coding upstream 122389 30316839 ~ 30337989 (+)
XLOC_024199 NA coding upstream 160716 30298377 ~ 30299662 (+)
XLOC_024205 CR753816.2 coding downstream 248886 30799236 ~ 30805004 (+)
XLOC_024206 CR381618.1 coding downstream 364828 30915178 ~ 31040725 (+)
XLOC_024207 CR381618.2 coding downstream 421494 30971844 ~ 30971960 (+)
XLOC_024208 CR381618.3 coding downstream 430983 30981333 ~ 30981447 (+)
XLOC_024209 rassf8a coding downstream 572456 31122806 ~ 31162816 (+)
XLOC_023973 CR762411.1 misc upstream 15242269 15217824 ~ 15218109 (+)
XLOC_024195 NA non-coding upstream 266303 30171915 ~ 30194075 (+)
XLOC_024212 NA non-coding downstream 698648 31248998 ~ 31258883 (+)
XLOC_024216 NA non-coding downstream 837767 31388117 ~ 31395681 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000120_01026758_01076388 NA coding CI01000120 null 1025930 ~ 1076931 (-)