XLOC_024219 (parp16)


Basic Information

Item Value
gene id XLOC_024219
gene name parp16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 31868268 ~ 31882618 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047993
GGTAGAATCAGCGCATGCGCAGCAGCAGTTGGACACCTTTAGCTTCCGGTGGCTGTCAGATGCCTGAACTTCAGGCCCACAAGTGCTGGGTATGCAGCCGCCTCTCCCCGCAGCGGCAGTCAGAGAGCTGGTTTGCTCCTGTCTACATCGAGACCCTGTAGCGGCAGATCTGCGCTGCAGTCTCTTCGTGGCTGCCGTCCAGAGCTACAAACATGATTCGGTGCTCAGACCCTTCCCTCCTCGCTACCTGAGAGGAGAGATCAAGGACTTTGAAGAGCTGcaaaaagatgtGGACAGTTTGCCAAACGTGAGAGATCTGGTTCGCCTCGGACATGGTGATGGAGATCATCATATGGCTCTTGTGCACTGGGTTCTGTCCTCCAAGAGCTTCGCTGTGAAGACTCTGCAGAAAGAGGAGTTTGCCAGACTCAGCCAGCTGGCTCAGAGAGAGGGGGTTTCAGCTCCAGCCCCAGACTTCCTCTTTGAGCTGCAGTACTGTGATTTGCTCAACTCTAAGTTTGAGCGGACGCGGGCCGGCCGAGACCTCATCTATGCATTCCACGGCAGCAGACTAGAGAACTTCCACTCCATCATACACAACGGATTACACTGCCATCTCAATAAGACCTCACTGTTTGGGGAAGGCACCTACCTGACCAGTGACCTCAGCATGGCCATCCTTTACAGTCCTCACGGGAACGGGTGGAGGGAAAGCGTCCTCGGGCCTTTCATCAGCTGCGTTGCTTTGTGTGAAATCATTGATCATCCTGACGTGAAGTGTCAGGTGAAGAAGAAAGACTCGGAGAGCATTGACCGACAGCGTCTGAGGGCCAGGAACAGTGAAGGTGGTGAGGTGCCCGAGAAGTACTTTGTGGTGACCAACAATGAGCTCTTAAGAGTTAAATACCTGCTGGTTTATTCTCAGAGACGCTACAGATCCAGACACGCTCGGGGGACGTCGTGGCTCGTCAGACATCATTTTGCCATCATGATGGGTCTGTATCTCCTGCTCCTCATATTCATCGGTGCCTTCAACTCGTCCGCTTTTCAGTCCTTCTGGCACAGAATGTTCCGGTAACCCAAGCTCAcatcacacatgcacactcatccAAAGTGCCTTTTACTCAAAGACTATCAAAGAGGGAGGAAAAAAGACTCAGGAACTTACTTCCTTCCCCTCAACAAAACATTCCTCCCTGTATCACTTGATTCTTGGGTAATCCTTCATtttattcacacaaacacactgtgcATCAGCCAACCGAGAAACTGCAGAACGAGCAGTAATGTTAGCTTTCGTGAATGTTACATGTTAGCATGTAGCCTGTTTTTACTTGTTGAACGATGGGTTCACTTTGTTAGTTACAACCAAATGATCAAGACAAAGCGTTGTCTTTTACCTGCCTTCTTCAACCTAGacattggcaaaaaaaaaaattgctgcttgtgttaataaaaataatcacgtaggaaaatctgtgcttttataataaatatttttcagtttCGATGCAAATATAGAAGTTCCTAGACGACCGTACTAATGTCTAGATCAGATCAACTATGCAGAAGACCCGTGTTATGGTGGTCGCTATCATTAAAACTGTAATGAAAATTAGTCTTGATATTGCATTAATGACTCTAACTTGATTTATCAGTCAGAATCTGAATTGTGaaggtatttaaataaataaatgcaacaaa

Function

symbol description
parp16 Predicted to enable NAD+ ADP-ribosyltransferase activity; kinase binding activity; and protein serine/threonine kinase activator activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and protein ADP-ribosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and nuclear envelope. Is expressed in several structures, including liver; median fin fold; presumptive ectoderm; vasculature; and ventral mesoderm. Orthologous to human PARP16 (poly(ADP-ribose) polymerase family member 16).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0071782 endoplasmic reticulum tubular network cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0019900 kinase binding molecular_function
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2289 Predicted to enable NAD+ ADP-ribosyltransferase activity; kinase binding activity; and protein serine/threonine kinase activator activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and protein ADP-ribosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and nuclear envelope. Is expressed in several structures, including liver; median fin fold; presumptive ectoderm; vasculature; and ventral mesoderm. Orthologous to human PARP16 (poly(ADP-ribose) polymerase family member 16).

Ensembl:

ensembl_id ENSDARG00000018593

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047993 True 1704 mRNA 0.47 7 31868268 31882618

Neighbor

gene id symbol gene type direction distance location
XLOC_024218 NA coding upstream 364799 31497318 ~ 31503469 (+)
XLOC_024217 tnnt3a coding upstream 449811 31405266 ~ 31418457 (+)
XLOC_024216 NA coding upstream 472587 31388117 ~ 31395681 (+)
XLOC_024215 lsp1a coding upstream 473753 31323970 ~ 31394515 (+)
XLOC_024214 tnni2a.4 coding upstream 579610 31276842 ~ 31288658 (+)
XLOC_024220 apba2a coding downstream 29535 31912153 ~ 31941241 (+)
XLOC_024221 duox coding downstream 76293 31958911 ~ 32018990 (+)
XLOC_024222 tjp1b coding downstream 148918 32031536 ~ 32271394 (+)
XLOC_024223 galk2 coding downstream 508176 32390794 ~ 32400209 (+)
XLOC_024224 sqor coding downstream 590659 32473277 ~ 32495363 (+)
XLOC_023973 CR762411.1 misc upstream 16650159 15217824 ~ 15218109 (+)
XLOC_024212 NA non-coding upstream 609385 31248998 ~ 31258883 (+)
XLOC_024206 CR381618.1 non-coding upstream 827543 30915178 ~ 31040725 (+)
XLOC_024229 NA non-coding downstream 1147000 33029618 ~ 33036104 (+)
XLOC_024231 dre-mir-190a non-coding downstream 1256457 33139075 ~ 33139200 (+)
XLOC_024234 NA non-coding downstream 1462176 33344794 ~ 33348735 (+)
XLOC_024235 NA non-coding downstream 1524502 33407120 ~ 33439620 (+)
XLOC_024236 NA non-coding downstream 1618727 33501345 ~ 33503564 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_01731806_01735794 PARP16 coding CI01000330 null 1731806 ~ 1735982 (+)