G493062


Basic Information

Item Value
gene id G493062
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28564379 ~ 28565133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU560241
gcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaataactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccagacaggtccaagatactgttgtgaagaagtttaaagctggatttggataaaaaaatatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaaagccatttcttaaaaatatccataaaaagtgtagtttaaagccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaacaaaaattgaactttttggcaacaatgcaaaacgttatgtttggcataaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU560241 True 755 lncRNA 0.43 1 28564379 28565133

Neighbor

gene id symbol gene type direction distance location
zgc:153044 dus18 coding downstream 8366 28552264 ~ 28556013 (-)
ube2d4 UBE2D4 coding downstream 96514 28455590 ~ 28467865 (-)
dbnlb dbnl coding downstream 116196 28430078 ~ 28448183 (-)
arid5a LOC106585613 coding downstream 139154 28414737 ~ 28425225 (-)
LOC110525671 sld5 coding downstream 149906 28403084 ~ 28414473 (-)
LOC110525678 LOC106585621 coding upstream 424274 28989407 ~ 29010716 (-)
LOC110525679 LOC106585622 coding upstream 458075 29023208 ~ 29070012 (-)
LOC110526490 LOC106580375 coding upstream 505583 29070716 ~ 29398888 (-)
LOC110525681 hectd4 coding upstream 846071 29411204 ~ 29483533 (-)
LOC110525683 NA coding upstream 849628 29414761 ~ 29415342 (-)
G493053 NA non-coding downstream 24554 28539576 ~ 28539825 (-)
G493040 NA non-coding downstream 48461 28514915 ~ 28515918 (-)
G493001 NA non-coding downstream 94134 28469988 ~ 28470245 (-)
G492994 NA non-coding downstream 112592 28451490 ~ 28451787 (-)
G493036 NA non-coding upstream 67 28565200 ~ 28567909 (-)
G493037 NA non-coding upstream 5104 28570237 ~ 28570553 (-)
G493030 NA non-coding upstream 7995 28573128 ~ 28573835 (-)
G493063 NA non-coding upstream 9940 28575073 ~ 28575355 (-)
G493064 NA non-coding upstream 10283 28575416 ~ 28575736 (-)
LOC110525655 LOC106585601 other downstream 729077 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 827401 27734995 ~ 27737024 (-)
G491539 NA other downstream 1320186 27216607 ~ 27244193 (-)
G491291 NA other downstream 1697221 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 2012752 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 846082 29411215 ~ 29415314 (-)
LOC110525684 LOC106585295 other upstream 937120 29502192 ~ 29520980 (-)
G494542 NA other upstream 1110190 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 1961553 30526034 ~ 30527686 (-)

Expression


Co-expression Network