RNA id: TU560241


Basic Information

Item Value
RNA id TU560241
length 755
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G493062
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28564379 ~ 28565133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaataactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccagacaggtccaagatactgttgtgaagaagtttaaagctggatttggataaaaaaatatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaaagccatttcttaaaaatatccataaaaagtgtagtttaaagccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaacaaaaattgaactttttggcaacaatgcaaaacgttatgtttggcataaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560226 lncRNA downstream 24554 28539576 ~ 28539825 (-) True G493053
TU560206 lncRNA downstream 48461 28514915 ~ 28515918 (-) True G493040
TU560160 lncRNA downstream 94134 28469988 ~ 28470245 (-) True G493001
TU560153 lncRNA downstream 112592 28451490 ~ 28451787 (-) True G492994
TU560041 lncRNA downstream 129212 28430078 ~ 28435167 (-) True dbnlb
TU560201 lncRNA upstream 67 28565200 ~ 28567909 (-) True G493036
TU560202 lncRNA upstream 5104 28570237 ~ 28570553 (-) True G493037
TU560189 lncRNA upstream 7995 28573128 ~ 28573835 (-) False G493030
TU560190 lncRNA upstream 7995 28573128 ~ 28573835 (-) True G493030
TU560242 lncRNA upstream 9940 28575073 ~ 28575355 (-) True G493063
XM_036979786.1 mRNA downstream 8366 28552264 ~ 28556013 (-) True zgc:153044
XM_021606020.2 mRNA downstream 8786 28552264 ~ 28555593 (-) False zgc:153044
XM_036979787.1 mRNA downstream 9988 28552264 ~ 28554391 (-) False zgc:153044
XM_036979778.1 mRNA downstream 96514 28455590 ~ 28467865 (-) True ube2d4
XM_021606018.2 mRNA downstream 96574 28455590 ~ 28467805 (-) False ube2d4
XM_021606021.2 mRNA upstream 424274 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA upstream 424274 28989407 ~ 29010716 (-) False LOC110525678
XM_021606022.2 mRNA upstream 458075 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA upstream 458075 29023208 ~ 29070012 (-) True LOC110525679
XM_036979791.1 mRNA upstream 505583 29070716 ~ 29269113 (-) False LOC110526490
TU559292 other downstream 729077 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 827401 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1320186 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1697221 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2012752 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 846082 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 913522 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 937120 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1110190 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1961553 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile