RNA id: TU560201


Basic Information

Item Value
RNA id TU560201
length 2187
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G493036
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28565200 ~ 28567909 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCATAGTTAACTGTACGatttgtaatatatatatttttttgatcaATCGTCACCCTGAGCAGAAGTGTATGGTCGACCTAGGTGCACTTTTTCTTTAAATCTATTGGTTGATCCAGCTTTCCATCCCAGATCCTGGAATCACTCACCATTGTGCTTTAGGGGGCCAAAAGTAACATGTCTCAAGAAACATATCACACTTAAGGTTATAACAGATTGATAAATACATAGTTCTTGTATATGGTTTTGGGTGATCTGTGTCTGGCGGAGAAGGGTTTCAGGAAAATGTGAGAGGACTGTCTCAGACTCAGGGCACAAAGCAAagggttagtgagtgtgttagAAATTACAAGTCCAGCCAACATCATCCATAGTACAGTTGAGTATTAGTACCAATAGGTCTGTTAGCAGACGTTAGTACTGTTAGGTATTAGAGTGttattgtatttattaaggaaTGACAAGAGAGCTGTTGGCAGTTGGGGGTTTGGTTTCAGAGTGAAAGAATATTAATGATAGTAACAGCCCCACTCTTAAACACACAatgtacacccacacacacagtggtttTAACAGACCATTAGGTTAAGGATGGTTTTAACCAGGGAGAGTCAGACAAGGCACTTCTCCAGTGCTTGGGTTTCAGTTTGGTTGATTAGTGAATGTTAGACTGTTAGTCCAGGTTAGTAAACCAGGATTACCCCAGTGTTGGTTAGTTCTTTACGACTCCAGCTAAGGTTACTCAGAGTTACCAGTACATGCAGCAATCACAAGACAAACCAGGCCTCGGGAAACCATCTAAAAACTAGGGTGGTAAGATTGAGAGATCTTAGAACCCccaacacagctacacacactgaCAATTCTAACATCCTCAACACTCCTGTAACGTTAGGGTAGACTAATGTTACTAAACCATCCGCACAGGCTTGTCATGGGTATGCTCCCTGCTAGCTTGCTTGGTTAGGAGCACATCATTGAAATTAACAGCAAGGCCATCTCAGCAGACTCAATCTTGTTAGTCATGTTAGACGTCAGAGATCGGAGGTGAGTAAGGCGTTAGTGTTGCCAAGGTTAcagagaagagaaaggacagtGCTGACAGCATGAGGAGAAGCAGGCATCAGAGAGAGGTGTTAGTCAACTGCAGTGTCAGTGCTTTGATCAGCTGAACAGTGTGGAAGGGGATCAGAACGTGTTAGAGTTATTTTACAAAGGAGGGGGGAGAAAGCATCCCTCAGTTAAACAGTATTTCAGGGAAGGAAATGCAAAGCACCAAAGTGTCAGACAcacaacactacaaccccacCCCTTATGAGTCTCTCTTATGGCATGAAATGTGGTCCTATCCAATAAAGTCCTGAGTAACGTGGCATAAAAGACTACAAGtatccctttcctgcagtcaaatgaccaaatctcCATCTAAATGgactcatgggtggaatgtttttCATATATTTTATCATTAATAAACGTTATTTCAAAAACCTGCCGAAAATTCTGTGTTTCTATGGTTTTGCAATGTTTGTTCGTCTTTGATGTATATAAactgtaatattgggatgcaaactccaaattgaatacatttcaaatgtatttctaatatGGTACAGGTATTTTTTtaaaacccataaccatgtgtgtgaggtgtatactctTGTTGCATAGTAGATttgtttaacttcttggtgacaggggggcagtattgagtagcttggatgaataaggtgcccagagtaaactgcctgctactctggcccagatgctaatatatgcatattattagtagtattggatagaaaacactgaagtttctaaaactgtttgaatgatgtctgagtataacagaactcatatggcaggcgataACCTGAGaaagatttcccacttcctggttggatttgaggtttgtagtttttcaactctgccattccaatatacagtgtaaatggggtcatattacacttcctaaggcttccactagatgtcaacagtctttagaacgttgtttcaggcttctactgtgaagtgggagtgaatgagagctgattgagacAGTTGTCTGCCAGAATGCCACAGGCTCCGaggcgccacttttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560241 lncRNA downstream 67 28564379 ~ 28565133 (-) True G493062
TU560226 lncRNA downstream 25375 28539576 ~ 28539825 (-) True G493053
TU560206 lncRNA downstream 49282 28514915 ~ 28515918 (-) True G493040
TU560160 lncRNA downstream 94955 28469988 ~ 28470245 (-) True G493001
TU560153 lncRNA downstream 113413 28451490 ~ 28451787 (-) True G492994
TU560202 lncRNA upstream 2328 28570237 ~ 28570553 (-) True G493037
TU560189 lncRNA upstream 5219 28573128 ~ 28573835 (-) False G493030
TU560190 lncRNA upstream 5219 28573128 ~ 28573835 (-) True G493030
TU560242 lncRNA upstream 7164 28575073 ~ 28575355 (-) True G493063
TU560243 lncRNA upstream 7507 28575416 ~ 28575736 (-) True G493064
XM_036979786.1 mRNA downstream 9187 28552264 ~ 28556013 (-) True zgc:153044
XM_021606020.2 mRNA downstream 9607 28552264 ~ 28555593 (-) False zgc:153044
XM_036979787.1 mRNA downstream 10809 28552264 ~ 28554391 (-) False zgc:153044
XM_036979778.1 mRNA downstream 97335 28455590 ~ 28467865 (-) True ube2d4
XM_021606018.2 mRNA downstream 97395 28455590 ~ 28467805 (-) False ube2d4
XM_021606021.2 mRNA upstream 421498 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA upstream 421498 28989407 ~ 29010716 (-) False LOC110525678
XM_021606022.2 mRNA upstream 455299 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA upstream 455299 29023208 ~ 29070012 (-) True LOC110525679
XM_036979791.1 mRNA upstream 502807 29070716 ~ 29269113 (-) False LOC110526490
TU559292 other downstream 729898 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 828222 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1321007 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1698042 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2013573 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 843306 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 910746 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 934344 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1107414 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1958777 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile