XLOC_024225 (ctdspl2a)


Basic Information

Item Value
gene id XLOC_024225
gene name ctdspl2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 32496723 ~ 32519415 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048006
GGGTTCTTCGCAAGAATCCCTCTGAGAGGAGGCGGGAAATGGCGTCCCGAGCAGCTGTAGCAGATCTATCTGTCGTTCTGTGACTCACACTCAGCGGAGAAACTGACCGACAGACGCTGTCGCGGGCCGCGGCCACTTCCACAACCACCTCTACACCGTGTCGTCGCGACCCCTGGCATTCTTACATGTGACTTTTGGGACAATGAGGCTGAGAGTGCGTAAAGCATCTCAGCAGCGGAGCGCCACCCCGTCCGCCCGGACCGTCAAGACCAAAAGGAAGCACTCCGAGGTGGAGCACAGTTTGTCCACTGAAGACGCCAAGATGCAGAAGCGAGACACGGGCATTTTCTCCACCATCAAACGCTTCATCAGAGGCAACGCCGTCAAGGTGGAGCAGTGCACTCCTGCGAAGAGAAGCCGTGTTGACTGTGATTCAGACAGTAATCTGATCACATCCACTCCGACCGGTGGAAACCTGCCCAGCAGAGCAAACCCCAAAACCCGCAGGAAAGGCCCTGTCAATGGAGATACCATGACAGGTCAGAATAAACCAGTAAAGCCCAATGGGAAGCTGGAGGTGCAGGCGGAGACTCCGAGCAGTCCGCCTCGCACCACTCTCCTGGGCACCATCTTCTCTCCTGTTTTTAGCTTCTTCTCGCCCGCCAACAAAAACGCTACGGCAGGCTCCGATTCCCCAGGCCAGGCGGTGGAAGCTGAGGAGATCGTGAAGCAGCTTGACATGGAGCAGCTTGAAGAAACCCCGACCAGCACTACCACAGACGGCCGAGACCTGACCTTTGACCCTGCACTAAACCCCAGACCGCTGCCTCACATAGACACAACAGTAGAGGAAGGAGAGATCGTCACAGAGGCGGATATGCCACCTCTGACTGCTGTAGGATCCAACAGCAATTACCCAGATGTCCCTCCATCACCTCCTGCAGAGGGGACTTATGAAGAGGACTGGGAAGTTTTTGATCCTTATTTCTTTATCAAACACGTGCCACCGCTGACTGAAGAGCAGCTCACCCGTAAACCTGCGCTGCCTCTGAAAACCAGGAGCACGCCCGAGTTCTCCCTTGTTCTCGATCTAGATGAGACTTTGGTTCACTGCAGCCTCAATGAACTGGAGGACGCAGCCTTGACCTTCCCTGTTCTTTTTCAAGATGTCATTTACCAGGTTTACGTCCGGTTACGGCCATTCTTTAGAGAATTCCTGGAACGCATGTCTCAGATCTATGAGATTATTCTGTTTACTGCTTCCAAGAAGGTGTATGCTGACAAACTGCTGAACATCCTGGACCCTAAAAAACAGTTGGTTAGGCACAGATTGTTTCGTGAGCACTGCGTGTGTGTTCAAGGGAACTACATTAAGGACCTGAACATCCTCGGTCGAGATCTTTCCAAGACTGTCATCATCGATAACTCCCCGCAGGCTTTTGCCTACCAGCTTTCCAATGGGATCCCCATTGAGAGTTGGTTCGTGGACAAGAATGACAATGAGCTCCTAAAGCTGGTGCCGTTTTTGGAGAAGCTGGTGGAACTGAACGAGGATGTTCGTCCATACATCAGAGAGCGATTTCGCCTGCATGACCTTTTACCCCCGGACTGAAGGTGGAAGCAAAACGAACACTTCTTGCCAACCTGACTGTTTTCAAGCAGTGGGGAAATTCACACCAAGGGGAGGGGAAAGGAGAACTTGCCACAAACTCTTTGCCATACGGATTTAAACTGCAGACTTGCCCACATAGGGCGTCTTTTATTCGGGACGGGAGGGGAGGGGAGGGGGGGTGTGTAGAcagatgttttaaaacaaatgactCGATGTATGCATACGTTTTctatacacaaaaacacacacacacacacacacacgtttatggATCCGACAGCGAGGATCATTTTTTGATTGGTCGCCAGTCTCGGAGTGAAGTTTATGCCTGATGGGGACTTTAATCGTAAAGCGCTTTTGTGCAGAAGTGGACTTTCGTCACTCCTTTTGGTGCTCAAAGGGACCCTCTGCCCTTCCAGGCCACTTCAGCAAGAATAGAAATCTATAAAACACGGATATATACATTCAACtacgtgtgtatatgtgtatatataacatttgtacatatatattttttcctgtcAAGTTTGTAAAACACAACTTGCCCTTTGGTTTTAATCCATTATGCATTCCTCCTTCGTTTTCGTTTCATAGATGAGCTGGCTTTTTATTCATTATCACTTTTTTTACTCTAGATTTTTCTGTATATTTAATGGCCTATCCGTTTCGCTTTCGCTCTCTTATTCGCAATGACGTGTAATCGAATATCCGGTCATCATATTTGTAAATCCCGACTCTTTGATTCTCCATCTATAGTTGTGGCTTTCAGTTACTGACCGCTTCCTATCATTTATCCATGTCAGTCCTTAAAACTTGGGGAGTTTTAactacttctttttttttatatacacgtatagctgaaatgtaaaatactgtatgtgCTTTAAATTGCTTTTctgtgaagaagaagaagaaaaaa
>TCONS_00048007
ACCGTGTCGTCGCGACCCCTGGCATTCTTACATGTGACTTTTGGGACAATGAGGCTGAGAGTGCGTAAAGCATCTCAGCAGCGGAGCGCCACCCCGTCCGCCCGGACCGTCAAGACCAAAAGGAAGCACTCCGAGGTGGAGCACAGTTTGTCCACTGAAGACGCCAAGATGCAGAAGCGAGACACGGGCATTTTCTCCACCATCAAACGCTTCATCAGAGGCAACGCCGTCAAGGACTCATTGATCGATCTGTCTTTGTGTCAGGTGGAGCAGTGCACTCCTGCGAAGAGAAGCCGTGTTGACTGTGATTCAGACAGTAATCTGATCACATCCACTCCGACCGGTGGAAACCTGCCCAGCAGAGCAAACCCCAAAACCCGCAGGAAAGGCCCTGTCAATGGAGATACCATGACAGGTCAGAATAAACCAGTAAAGCCCAATGGGAAGCTGGAGGTGCAGGCGGAGACTCCGAGCAGTC

Function

symbol description
ctdspl2a Predicted to enable phosphoprotein phosphatase activity. Orthologous to human CTDSPL2 (CTD small phosphatase like 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-647 Predicted to enable phosphoprotein phosphatase activity. Orthologous to human CTDSPL2 (CTD small phosphatase like 2).

Ensembl:

ensembl_id ENSDARG00000061587

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048006 False 2531 mRNA 0.48 13 32496723 32519415
TCONS_00048007 True 478 mRNA 0.55 4 32496877 32506808

Neighbor

gene id symbol gene type direction distance location
XLOC_024224 sqor coding upstream 1360 32473277 ~ 32495363 (+)
XLOC_024223 galk2 coding upstream 96514 32390794 ~ 32400209 (+)
XLOC_024222 tjp1b coding upstream 225329 32031536 ~ 32271394 (+)
XLOC_024221 duox coding upstream 477733 31958911 ~ 32018990 (+)
XLOC_024220 apba2a coding upstream 555482 31912153 ~ 31941241 (+)
XLOC_024226 scaper coding downstream 5716 32525131 ~ 32739724 (+)
XLOC_024227 etfa coding downstream 236070 32755485 ~ 32787247 (+)
XLOC_024228 CABZ01046980.1 coding downstream 483548 33002963 ~ 33016471 (+)
XLOC_024229 NA coding downstream 510203 33029618 ~ 33036104 (+)
XLOC_024230 tln2b coding downstream 514218 33033633 ~ 33151690 (+)
XLOC_023973 CR762411.1 misc upstream 17278614 15217824 ~ 15218109 (+)
XLOC_024218 NA non-coding upstream 993254 31497318 ~ 31503469 (+)
XLOC_024216 NA non-coding upstream 1101042 31388117 ~ 31395681 (+)
XLOC_024212 NA non-coding upstream 1237840 31248998 ~ 31258883 (+)
XLOC_024208 CR381618.3 non-coding upstream 1515276 30981333 ~ 30981447 (+)
XLOC_024207 CR381618.2 non-coding upstream 1524763 30971844 ~ 30971960 (+)
XLOC_024231 dre-mir-190a non-coding downstream 619660 33139075 ~ 33139200 (+)
XLOC_024234 NA non-coding downstream 825379 33344794 ~ 33348735 (+)
XLOC_024235 NA non-coding downstream 887705 33407120 ~ 33439620 (+)
XLOC_024236 NA non-coding downstream 981930 33501345 ~ 33503564 (+)

Expression


Co-expression Network