XLOC_024256 (tmem231)


Basic Information

Item Value
gene id XLOC_024256
gene name tmem231
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34845115 ~ 34859819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048056
GAGAAGCTGACGTCAAGGCGGAGCCGTACCATTTAGCCTATTCGGGTGCTCTTATACACAATTTCATAAATATTTGaagcaaatatatatttagagCAGTATAAACTATGTTATTACACtacattgtgtttgttttaaatacaatGTACACTAATAATCCTATTGTTCACGAAGTGAAGCGTTTCTAGCTGTTGCTATGGTGAGCAAACGACGCTACACAACCGGAACTACAACCAGCGCGCGTGCTAGTTTATTTGCAGGATTTACTCATCTTTAGTTTAAGTTTGAGCGTTAAGTTTTGTGTTTAAAGGTTGTTAATACATATATCACACGATATACGCGAGTTTAAATGGTGTTGGATATGAGTTCATATTTAACGTTACTCCAATATAAATAACGCATAATGGCGTTTTATGACGTGTACGCGCATCCCGCTTTAATAAGGTACAGGACTTGCGTTTGCACGCGAGCTACGCTGTTTGTCTGTGTGGTTTTAGGCCTCACTTATATTTCACCTCTTCTGGTGGCTTACAGAAGTCAAGGTTTCTGGCTAAAGAGGAACTCATATGAAGAGCAGCCCGTCGTTAAATTCCAGTATGACCTGATTTTGCTCGGTGTAACAGACACAACAGGCAATTATTTAGCATGGAGCACATTTCCCAACTTTAATCGACTGATTGGAGACAATTTACGCATCCCTGAAATATCTgCTCAAGAGGAGGACAAGAACCAGGATGGGAAGTCTGACGTTCTCCTGCTCCAGATCAGCGTCCCGCTCAAACCAGCAGAGCAGATGTTCAGCGTTCAGCTCCTCCTCACCTTCTCCTACCAGCTGTTTCGAATGTCGACTGTGGTGATGCAGACGCTGGCCTTCATACAGCACTCATCTCCTGTTCCCGGCTCTCAGCTCTTTATCTGTGGAGACCTGAGGCTAAACCAGCGAACTCCTCTTCCTCACAGAGGTTTACACAGTACCTACAACGTGTCTGTGATTGATGGATCCAGTCCATTTGCGAGTACATATGACCTGACCAACATCATAAGACTCTATCAGCAGAGGAACTTGACGACGCATCTCTCTGGTGTCATTCCCGTGTGGACGGTGGGCAGAGCGGCAAACGCTCCTTTTCAGATCAGCGCACAGATCCACTATCCAGTAGAGATGATTGATTATCGGCCGGGCTTCTGGGAAACCATAAAGTTCGCCTGGATCCAGTATGTCAGCGTCCTGCTCATCTTTCTGTGGGTTTTCCAGCACATTCAGACGTTCATCTTTCAAAACCAGGTTTTACCCACCATCACCATACCACCGTTTAAACAGCACAGATCCTGAGACCTccggtttttgtgtgtgtttttacattaGCTTGCATATACTGTAGAATTATCAGTCATTAAGAGTTGTGCTCCTATTTATAGTTCAGTTTTCAGTACATTGGTATGAAATTCCCAACAGCATGCATGTGTAATCTCCAGTTTTTCCGGTTTCAGGACGTTTCGAGTTCAACCACTTATTGTGCAAGATAATGTTTGCTTTGTGACATTAGTGGGAAAGTGTAGAAATGTATACAACTGGCATAGGCCTAACCTTATTTTTCTATCttaatttgcataaaaaatgACTTGAAAGA
>TCONS_00048057
GTTGGATATGAGTTCATATTTAACGTTACTCCAATATAAATAACGCATAATGGCGTTTTATGACGTGTACGCGCATCCCGCTTTAATAAGGTACAGGACTTGCGTTTGCACGCGAGCTACGCTGTTTGTCTGTGTGGTTTTAGGCCTCACTTATATTTCACCTCTTCTGGTGGCTTACAGAAGTCAAGGTTTCTGGCTAAAGAGGAACTCATATGAAGAGCAGCCCGTCGTTAAATTCCAGTATGACCTGATTTTGCTCGGTGTAACAGACACAACAGGCAATTATTTAGCATGGAGCACATTTCCCAACTTTAATCGACTGATTGGAGACAATTTACGCATCCCTGAAATATCTgCTCAAGAGGAGGACAAGAACCAGGATGGGAAGTCTGACGTTCTCCTGCTCCAGATCAGCGTCCCGCTCAAACCAGCAGAGCAGATGTTCAGCGTTCAGCTCCTCCTCACCTTCTCCTACCAGCTGTTTGTGTCTGTGATTGATGGATCCAGTCCATTTGCGAGTACATATGACCTGACCAACATCATAAGACTCTATCAGCAGAGGAACTTGACGACGCATCTCTCTGGTGTCATTCCCGTGTGGACGGTGGGCAGAGCGGCAAACGCTCCTTTTCAGATCAGCGCACAGATCCACTATCCAGTAGAGATGATTGATTATCGGCCGGGCTTCTGGGAAACCATAAAGTTCGCCTGGATCCAGTATGTCAGCGTCCTGCTCATCTTTCTGTGGGTTTTCCAGCACATTCAGACGTTCATCTTTCAAAACCAGGTTTTACCCACCATCACCATACCACCGTTTAAACAGCACAGATCCTGAGACCTccggttt

Function

symbol description
tmem231 Predicted to be involved in cilium assembly; regulation of protein localization; and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in cilium and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Predicted to be active in ciliary membrane and ciliary transition zone. Is expressed in blood; median fin fold; and periderm. Human ortholog(s) of this gene implicated in Joubert syndrome 20 and Meckel syndrome. Orthologous to human TMEM231 (transmembrane protein 231).

GO:

id name namespace
GO:0032880 regulation of protein localization biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0036038 MKS complex cellular_component
GO:0042995 cell projection cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1386 Predicted to be involved in cilium assembly; regulation of protein localization; and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in cilium and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Predicted to be active in ciliary membrane and ciliary transition zone. Is expressed in blood; median fin fold; and periderm. Human ortholog(s) of this gene implicated in Joubert syndrome 20 and Meckel syndrome. Orthologous to human TMEM231 (transmembrane protein 231).

Ensembl:

ensembl_id ENSDARG00000042272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048056 False 1631 mRNA 0.43 7 34845115 34859819
TCONS_00048057 True 847 mRNA 0.47 6 34845469 34859533

Neighbor

gene id symbol gene type direction distance location
XLOC_024255 adat1 coding upstream 11633 34811038 ~ 34833482 (+)
XLOC_024253 wwp2 coding upstream 39971 34748125 ~ 34805144 (+)
XLOC_024254 mir140 coding upstream 53649 34791362 ~ 34791466 (+)
XLOC_024252 NA coding upstream 175413 34668706 ~ 34669702 (+)
XLOC_024251 rps27l coding upstream 194741 34641536 ~ 34650374 (+)
XLOC_024257 chst6 coding downstream 2406 34862225 ~ 34870891 (+)
XLOC_024258 spire2 coding downstream 28180 34887999 ~ 34911606 (+)
XLOC_024259 sntb2 coding downstream 55757 34915576 ~ 34938157 (+)
XLOC_024260 vps4a coding downstream 78498 34938317 ~ 34948058 (+)
XLOC_024261 NA coding downstream 94581 34954400 ~ 34960247 (+)
XLOC_023973 CR762411.1 misc upstream 19627006 15217824 ~ 15218109 (+)
XLOC_024248 NA non-coding upstream 321876 34510588 ~ 34523239 (+)
XLOC_024249 BX323824.1 non-coding upstream 332171 34511205 ~ 34512944 (+)
XLOC_024247 NA non-coding upstream 357307 34477938 ~ 34487808 (+)
XLOC_024264 NA non-coding downstream 185881 35045700 ~ 35125945 (+)
XLOC_024275 NA non-coding downstream 261500 35121319 ~ 35153715 (+)
XLOC_024279 NA non-coding downstream 283149 35142968 ~ 35147831 (+)
XLOC_024287 NA non-coding downstream 713054 35572873 ~ 35576543 (+)

Expression


Co-expression Network