XLOC_024268 (si:dkey-108k21.11)


Basic Information

Item Value
gene id XLOC_024268
gene name si:dkey-108k21.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 35054246 ~ 35069608 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048073
ACATGCCAGAACCAGCAAAGCCTGCGCCCAAGAAGGGCTCTAAGAAAGCCGTCTCAAAGACTGCAGGGAAGGGCGGTAAGAAGCGTAAGAGGACCAGGAAGGAGAGCTATGCCATCTACGTCTACAAAGTGTTGAAACAGGTCCATCCCGACACCGGGATCTCCTCGAAGGCGATGGGCATCATGAACTCTTTCGTCAACGACATTTTCGAGCGCATCGCCGGTGAGGCGTCTCGTCTCGCTCACTACAACAAGCGCTCCACCATCTCATCCAGAGAGATCCAGACCGCCGTGCGCCTGCTGTTGCCCGGAGAGCTGGCTAAACACGCCGTGTCTGAGGGCACAAAGGCCGTCACCAAGTACACCAGCTCAAAG
>TCONS_00049279
CTTCCAGAGAGATCCAGACCGCCGTGCGTCTGCTCCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCCGAAGGCTCTGGTTTAAGACACAAGAAGCCATCGGTTCACACTGACCTCCTGTAGTTTGGTGATTTCCTTTTTCAGTTTGACCAAGTATTCGATCTTCTGCTTGGGGTTCTGATGGCCCAGCAGTTTCCCATTTTCCTCTGTCAGATGATCTACTTGCTTTCTCAAAACCTCGATTTCCTGCAGGACACAGCTAGGgttaacatttttctaaaaaagAAACATGCGACTTCAAATCCTTTGGTGTTGTGTGGCATTAAGATTGTTGCTTTGTGACCAGGTCAACATTTTCTATTCAAAGAAATCTCCTTAGTCTCTTTCACAAAGTGATACTGGTAAACTGCCATCAAATTAGTGAAATGACTGCTGAAATGGAATAAACAGCACAATATACTAGTAATTTGAGGaaaattggcaaaaaaaaatctgatatttaaaaaaaaggtctgTTTATGGCATTAAATGGAACTTGCAAGGCTTTTTTTGACTAATTTGTTCATGGGGAATTGATTGAAAATCCACCAACCGCATTTCAtggtttgctattggtggatttcATGTGATTGACAGCTTGATCCCGCCCTCTTCAAGTTAAATTGTGTATCTCGCTGACCTGCTGTAGTTTTTCCTGTTCTTGGTCTTTCTGGCGCAGCTCTCGAAGCTCGAGGCAACGGTTCCTGAGTTCAGTGGTCAGTTCCTGCACACACGTCTGAGACTGTACAAGAGTGACTTCA
>TCONS_00048080
ATGCCTGAACCAGCGAAGACCGCACCCAAGAAGGGCTCCAAGAAAGCCGTCACCAAGACCGCCGGCAAAAGCGGCAAGAAACGCAGAAGGACCAGGAAGGAGAGCTATGCTATCTACGTGTACAAAGTATTGAAGCAGGTTCATCCTGACACCGGGATCTCCTCGAAGGCGATGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAGGCGTCTCGTCTCGCTCACTACAACAAGCGCTCCACCATCACTTCCAGAGAGATCCAGACCGCCGTGCGTCTGCTCCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCCGAAGGTACAAAGGCCGTCACCAAGTACACCAGCTCCAAGTAA

Function

symbol description
si:dkey-108k21.11 Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-105 Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

Ensembl:

ensembl_id ENSDARG00000111964 ENSDARG00000112561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048073 False 374 mRNA 0.56 1 35054246 35054619
TCONS_00049279 False 799 lncRNA 0.43 3 35054513 35069608
TCONS_00048080 True 375 mRNA 0.57 1 35067318 35067692

Neighbor

gene id symbol gene type direction distance location
XLOC_024267 hist2h3c coding upstream 2091 35051656 ~ 35052155 (+)
XLOC_024266 si:dkey-108k21.10 coding upstream 3241 35050385 ~ 35051005 (+)
XLOC_024265 hist1h2ba coding upstream 4928 35048945 ~ 35049318 (+)
XLOC_024263 flnca coding upstream 13189 35019693 ~ 35041057 (+)
XLOC_024262 ccdc136b coding upstream 41265 34984333 ~ 35012981 (+)
XLOC_024275 NA coding downstream 51711 35121319 ~ 35153715 (+)
XLOC_024276 si:dkey-261m9.6 coding downstream 62482 35132090 ~ 35132464 (+)
XLOC_024277 hist1h2a3 coding downstream 63796 35133404 ~ 35133790 (+)
XLOC_024278 CR762436.2 coding downstream 64785 35134393 ~ 35134803 (+)
XLOC_024279 NA coding downstream 73360 35142968 ~ 35147831 (+)
XLOC_023973 CR762411.1 misc upstream 19836137 15217824 ~ 15218109 (+)
XLOC_024261 NA non-coding upstream 93999 34954400 ~ 34960247 (+)
XLOC_024254 mir140 non-coding upstream 262780 34791362 ~ 34791466 (+)
XLOC_024252 NA non-coding upstream 384544 34668706 ~ 34669702 (+)
XLOC_024248 NA non-coding upstream 531007 34510588 ~ 34523239 (+)
XLOC_024287 NA non-coding downstream 503265 35572873 ~ 35576543 (+)
XLOC_024288 NA non-coding downstream 518549 35588157 ~ 35592065 (+)
XLOC_024292 BX957352.1 non-coding downstream 811807 35881415 ~ 35881531 (+)

Expression


Co-expression Network