XLOC_024332 (si:ch1073-174d20.1)


Basic Information

Item Value
gene id XLOC_024332
gene name si:ch1073-174d20.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 37126921 ~ 37137446 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048143
agagagagagagagagacagagagcgtGCACGAGGCAGGAGGCGCTCCCTCTAATCCCGGCTGCGACGCCAACCAGCACTGCGATAGACTTAATGGAGGCTCAGGCAGACTCCAGTGCTGCAGAGCCTCTTAGAGACAGAGAGTTCCAGAAGCTTCTGAAGTCCTCCAGCTCTGCCAGTCTCACCAGCGAGGCATCCCATAATGCCTCAGGAGAGCATGTCGGTACTCCGGCACATCATGGCAGCCAGGTGCTGATCACAGAGAAACGACagcCACTCAGCAGTGTGTCCTCTCTGGAGGTTCACTTTGATCTGCTGGACCTGACGGAGCTCACAGACATGTCGGACCAGGAGCTGGGAGAAGTGTTCGCCGACTCAGATGATGAAAACCACACATATTCCCCTGCAATTGACCCCACAGACCGCCAGCAGCCGCCGCTACCCAGATTCCCTCACAGCGGATACGTGCGCTCGCCATCATGGACCCGCGGTGGAAAAGCAGAGCAGCAGACGAGGGACCGAAAACACCACAGCGACTCGGAAAACACCGAGCCCATGCTGAAGATAGAGCGCTCGCAATCCCAGCAGCCCTGAGAACCACACAGCAGGGGCTTCTGGGTAACAAACACAGCTGTCATGTGGAGATTAGAGAATCCCCTTCAAAAATAGGAACCTTCgggatccacacacacacacacacacacacacacacacacacacacggagatcCCACATCAAGATGATGCAATCCCTTTATTTAATATGGGCCGAAAGTGCACTCTTTCTTAAGATGATGGATTTTGGGACACGGTGATGTTCCAAATGGGATATATCGCCCTTTTAAGGGCACTatggaggaaataaataaataaatggccgCCATATTGAAGTGACGTTCCAAACTGAAGAGCTCAGAACTGACCACTTTTAAGGGCCCTTTGGGAATTAAGGACTTTTTAGGATAAATACAGCTGATGAACACTTGATGCAGAAAAGCTGTTTGGTGTCACACAGTGCACTTAATTTAGATCCCTATGCTCTAACCCCTTCAGAAGAACCCTCAGTAGGGATTATGGCGTAGGGATGAGCCCTTCCCAATGGAACCCAGTGTGAGGCTGCATTCCAGTCCAATTTATTCACTCTGTCTTGCTCTTTCGAGAGTATGTCATTGATTATCACCCTAGTGTCCACTACTGGTGGAGCCCTAAAGCCTTGAGCACTAGGGAACTACATTGTTGTGCCAACACAATTGCATTGCATTCTGGGACATACAGGTAGTGGAGTGGACATTTGAAGCCGACTCACCTTCTTGGTCAAAATCGAGGGATCGAGTCCATGCAAACTTCCCTCGATCACTTGATGAGGTGGATCGCACTTTAAAATGGTAGCAGGGAACAAGTAAAGGGAAGTTCGCAAATGTGTTTCTAAAAGTGGACTGGAACGCAGCCTAGGCTGACACAGCGACGTTCCAAATGGGATATATCGATGAACACGTCAGGCTATGATCCCTAAAGCAGGAAAGCTGTTTGGTGTCACACAGTGCACTTAATTCAGGTCCCTATGCTCTAACCCCTTTAGAGGGATCCTCAGTAGGGATTATGGCGTAGGGATGAGCCCCTCCCAAGGGAACCCAGTGTGAGGCTGCATTCCAGTCCAAATTATTTCTTGTTCCCTTGAATGTATGTTATTGGTTATCCCCCTAGTGTCCATCACTGGTGGAGCATCTGAATGGGATTAAATGGAACGCCCTTAACCCTTAAGCACTTGGGAACTACGACTGCAGTGCGTATTTTGTATCACTCGCTAACTTCCCACAGTCTCATTCCTTTATATGTATGGCACTGATTGTTGCGCAAGTGTACACTACTGGTGGAGCATCTGAATGGGTTCAATTGGAGAGCCCTAAACTCTTGAACACTAGGGAACTACACTGCTGTCCACCACAATTGCATTGCATTCTGGGACATGTGGATGGTGGAGTGGACATATGAAGCCTTCTTGGTCAAAATCGAGGGTCAAGTGCATGTAAACTTCCCTTGTTCACTTGATGAAGTGGATCGCACTTTAAAATGGTAGGGAACAAGTAAAGGCTTCAGGCTTTTAAGCAGGAAAGCTGTTTCGTGTCACACAGTGCACTTCATTTAGATCCCTATGCTCTAACCCCTTCAAAGGGACCTTTAAGGGATGAGCCCTTCCCAATGGAACCCATTGTGAGGCTGCGTTCCAATTCAATGTGTTCACTGTCTCATCCCCTCGAATGTACATCACTGATTATGTTACACAAGTGTTCACTTTTGGCAGAGCGTCTCAATTGGTTTAAATGGAACGTCCTAAACCCTTAGGAACTACGGCTGCATTCAGGCTAATTTTGTATTCCCTTCACTCGCTAACTTCCCTCCGTCTCATTCCCTCGGATGTACATTGTTGATTTTCACACTAGTGTTCACTATTGGTGGAGCAGCTGAAGGGGTTTAAATGAAACACCCTAAACCCTTGAGAACCACGCTATTGTAACACCACAATCGTGTTGCATTCTGGGACATACAGGTGCTGTAGTGGACATATGAAGCCGACTCTCCCTTGGTCAAAATCAAGGGATCAAGATAATGTACAATTCCCTTGTTTACTTGAAGTGGAACGCATTTGAAAACAGTAACAGGCATTCCCCCAAGGGGACAAGTGAAGGGAAGTTCACAAGTGTGTTTCTAAATGTGGACTGGAAAGCAGTCTGGGCtgcattgcattatgggatgtatAGGTGTTCGTGGACATATGAAGCCTACTCACTTACTCGGTCTACATCGAGAGTCCATGTAAGCTTCCCTTGTTCACTTGATGAAGTGGAAAACCCTTGAAAATGGCTTTGGGGACTTCCTCGAAGGAACAAGGGAAGTTCGCCAGTGTGTATAAGTGGATTGGAACGCAGCCCGAGTCTTCTCCATGTGCCTGCTGCATTATGGGAGATGTAGGCATGATGTAGCACTACACACCAACGCCTCAAACTAAAGAGGATTTCACAGTCAAGGATAAAAGCAATGCGTCACAAACACTGAGAATACAaggatcagttcagttcagtgtgggttaaatttccctgctgaaagtccaaacactgaagagcaaatcca
>TCONS_00048144
TGCATTGTTCTATGTTTCTTTGCAGAGCCTCTTAGAGACAGAGAGTTCCAGAAGCTTCTGAAGTCCTCCAGCTCTGCCAGTCTCACCAGCGAGGCATCCCATAATGCCTCAGGAGAGCATGTCGGTACTCCGGCACATCATGGCAGCCAGGTGCTGATCACAGAGAAACGACagcCACTCAGCAGTGTGTCCTCTCTGGAGGTTCACTTTGATCTGCTGGACCTGACGGAGCTCACAGACATGTCGGACCAGGAGCTGGGAGAAGTGTTCGCCGACTCAGATGATGAAAACCACACATATTCCCCTGCAAACCGCCAGCAGCCGCCGCTACCCAGATTCCCTCACAGCGGATACGTGCGCTCGCCATCATGGACCCGCGGTGGAAAAGCAGAGCAGCAGACGAGGGACCGAAAACACCACAGCGACTCGGAAAACACCGAGCCCATGCTGAAGATAGAGCGCTCGCAATCCCAGCAGCCCTGA

Function

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-359 Predicted to be involved in negative regulation of protein kinase activity. Predicted to be located in cytoplasm. Orthologous to human DBNDD1 (dysbindin domain containing 1).

Ensembl:

ensembl_id ENSDARG00000090108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048143 False 3127 mRNA 0.48 4 37126921 37137446
TCONS_00048144 True 483 mRNA 0.56 3 37130450 37134912

Neighbor

gene id symbol gene type direction distance location
XLOC_024331 CU929365.1 coding upstream 282672 36844127 ~ 36844249 (+)
XLOC_024330 NA coding upstream 389663 36726590 ~ 36737258 (+)
XLOC_024329 mafb coding upstream 449940 36674715 ~ 36676981 (+)
XLOC_024328 CABZ01088576.1 coding upstream 617132 36509674 ~ 36509789 (+)
XLOC_024327 FO904923.1 coding upstream 670003 36456800 ~ 36456918 (+)
XLOC_024333 si:dkey-234i14.3 coding downstream 72173 37209619 ~ 37215844 (+)
XLOC_024334 si:dkey-234i14.6 coding downstream 131454 37268900 ~ 37277392 (+)
XLOC_024335 tmed6 coding downstream 148291 37285737 ~ 37288184 (+)
XLOC_024336 igl4v8 coding downstream 151642 37289088 ~ 37317174 (+)
XLOC_024337 si:dkey-234i14.12 coding downstream 152760 37290206 ~ 37290726 (+)
XLOC_023973 CR762411.1 misc upstream 21908812 15217824 ~ 15218109 (+)
XLOC_024326 NA non-coding upstream 675200 36448584 ~ 36451721 (+)
XLOC_024339 CU207301.3 non-coding downstream 193682 37331128 ~ 37337143 (+)
XLOC_024345 FO834799.2 non-coding downstream 329211 37466657 ~ 37476172 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000357_00560467_00568490 NA coding CI01000357 null 560467 ~ 569166 (+)