XLOC_024326


Basic Information

Item Value
gene id XLOC_024326
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36448584 ~ 36451721 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049290
CTAATCACTAATTTAGTGCCAGCCATGGCATTCTGCCGGGGGGCACATACACAGGGATACAAGGCTGTGTACACACTTATGAGGGCGGACAGCACTGGATGAACCTCTGCAGATCGCCTTGTGTCTTTTAGTGTCAGGGTCGAATCAAAACAAACACTAACTTCCTGCGCTCGCTTCACACATCAGCCTGGGCCAGAAAACACACACCGCAGTTATGCTGTATACCGCTTACTTTCTGCTGCAAGACACAAAAAAGGAGAGGCTTAGAAGAATGTTCCTGCTGCCCTGTTCTACGACACTGTAAAgaattgaatgagtgtgtggtaCTGGCATGTACAGAAACCACAGCATAGTTATGGAGAAGCTGAAAATCAACTGCAAACAACTTGCTTTCTGATTCAGAACACAAAAAGAAAaggttttgaagaatgtttgtgcTGCCCTGTTTTACTACAcagtaaaaatgtaatgacaaagttTGGGGCTGGGTTGTGTGTCTTTGGCATGGTCAGAAAACACTACAGTTATGGAGAAGCTGAAAATTCAACTGCATTCCACTTTTTGGTGCAGAACACAAAAAGGAAAGGTTTAGAAGAATGTTCCCGCTGCCCTGttctaatacactgtaaaaataaatgaaatgtcaaaGTTTGGGGTGGGATAGGGTGTTTCGTTAGCATGGTCAGAAAACAGATTACAGTTAGGGAGAAGCAGAAAATTCAACTGCATTTCTGATGCGGAACACATAAAAGGAGAGGTTTAGAAGAATGTTTGCGCTGCCCTGTTctataatattgtaaaaattgaatgagtgtgtgacaTTGGCTCGTTATAGAGAAATTTCAACTGCTGAAATTTAACTGCATACAATCTAAatcaaaacaaagaaagaaaggagaGGTTTCAAAGAATGTTTGTGCTGCCTTGTTTTACTGCAcagtaaaaatgtaatgacaGAAAGTTTGGGGCTGGGTTGTGTGTCTTCGGCATGGTCAGAAAACATACCACAGTTATTTTGTCTGCTTTCCGGTGCAGAGCACAAAAAATGAGAGGTTCAGAAGAATGTTCGTGCTGCCCTGttcttctacactgtaaaaaaatgtaatgacaaaaagttaGGGCTTGGGTTGGATTGTGTCATTGGCATGGTCAGAAAACACACTACAGTTAAGGAGAAGCTGAAAATTCAACTGCATTTCTGGTGCGGAACACACAAAAAGAGATTTAGaagaatgttcatgctgctctgTTCTTCTACACTAAGAAATTGAATGACACAGTTTGGGGTTGGGTGGTGTGTCGTTGGCATGGTCAGGAAACGCAATACAGTTATGGAGAAGCTGATATTCAGCTGCATACAGCTTACTTTCTGGTGCAGAAAAAATAAAGGAGAGGTTTAGAAGAATGTGCATGCTACCCTGTTTGTCTACACTAAAAAAAAGTTGAATGACAAAAAGTTTGGGGCGGGGTAGGGTTTCGTTGGCTTGGTCAGAAAACATACCACAGTTATAAAGAAGCTGGAAATTTAACTGCATTTCTGATGCGGAACACAAAACCTGAGTTTTACAAGAATGTTCGCACTGCCCTGTTCTATAATACGGTAAAAAGTGGAATAAGTGGCATGAGAAGAAATCACACCATAGTTGTGGAGAAGCTTTAACTGCTGAAAATCAGCTGCACACGACTTGAAACGACTTTCTGATTCAGAACACAAAAAAGAgaggttttgaagaatgttcatgctgctgcgttctactacactgtaaaaaaacaatattatacaaagccagaaaaaaaacactgcaggtaTGGCAAAGATGAAATTCAACTGCACATGTGCATATGACTTACTTTCCGGTGTGGAACACAAAAAGGAGAGGTTTAGAAGAATGTTCACGCTGCCCTGTTCTACTGCTAAATTGCAACAAAATTTAATGACAAAAGGTCAAgacttttttttgggggggggctgTGTAGCATCGAAAATTCAACGGTATACTGCTTTCTGTCTGGTGTAAAACAAtacttaaatgtcaataaaagacaCTTTGTTAAACAGTAGTTCAACATAAAAAGTCACACCAacatgcaattcacaaccgtgaATACgcgtgaatcacaaaatacggaaactgctCATTAACATATTATtacaacgcacacacacacttcacagaATGAAGATGCATGGACAGGGCaaagtggac
>TCONS_00049291
ATCAACTGCAAACAACTTGCTTTCTGATTCAGAACACAAAAAGAAAaggttttgaagaatgtttgtgcTGCCCTGTTTTACTACAcagtaaaaatgtaatgacaaagttTGGGGCTGGGTTGTGTGTCTTTGGCATGGTCAGAAAACATACCACAGTTATATTATCCGCTTACTTTCCGGTGCAGAGCACAAAAAATGAGAGGTTTAGAAGAATGTTTGTGCTGCCCTGTTCTTctaaaaatgaatgacaaaaagtTTGGGGTTGGCTTGTGTCATTGGCATGGTCAGAAAACGCACTACAGTTATGGAGAAGCTGAAAATTCAACTGCATTCCACTTTTTGGTGCAGAACACAAAAAGGAAAGGTTTAGAAGAATGTTCCCGCTGCCCTGttctaatacactgtaaaaataaatgaaatgtcaaaGTTTGGGGTGGGATAGGGTGTTTCGTTAGCATGGTCAGAAAACAGATTACAGTTAGGGAGAAGCAGAAAATTCAACTGCATTTCTGATGCGGAACACATAAAAGGAGAGGTTTAGAAGAATGTTTGCGCTGCCCTGTTctataatattgtaaaaattgaatgagtgtgtgacaTTGGCTCGTTATAGAGAAATTTCAACTGCTGAAATTTAACTGCATACAATCTAAatcaaaacaaagaaagaaaggagaGGTTTCAAAGAATGTTTGTGCTGCCTTGTTTTACTGCAcagtaaaaatgtaatgacaGAAAGTTTGGGGCTGGGTTGTGTGTCTTCGGCATGGTCAGAAAACATACCACAGTTATTTTGTCTGCTTTCCGGTGCAGAGCACAAAAAATGAGAGGTTCAGAAGAATGTTCGTGCTGCCCTGttcttctacactgtaaaaaaatgtaatgacaaaaagttaGGGCTTGGGTTGGATTGTGTCATTGGCATGGTCAGAAAACACACTACAGTTAAGGAGAAGCTGAAAATTCAACTGCATTTCTGGTGCGGAACACACAAAAAGAGATTTAGaagaatgttcatgctgctctgTTCTTCTACACTAAGAAATTGAATGACACAGTTTGGGGTTGGGTGGTGTGTCGTTGGCATGGTCAGGAAACGCAATACAGTTATGGAGAAGCTGATATTCAGCTGCATACAGCTTACTTTCTGGTGCAGAAAAAATAAAGGAGAGGTTTAGAAGAATGTGCATGCTACCCTGTTTGTCTACACTAAAAAAAAGTTGAATGACAAAAAGTTTGGGGCGGGGTAGGGTTTCGTTGGCTTGGTCAGAAAACATACCACAGTTATAAAGAAGCTGGAAATTTAACTGCATTTCTGATGCGGAACACAAAACCTGAGTTTTACAAGAATGTTCGCACTGCCCTGTTCTATAATACGGTAAAAAGTGGAATAAGTGGCATGAGAAGAAATCACACCATAGTTGTGGAGAAGCTTTAACTGCTGAAAATCAGCTGCACACGACTTGAAACGACTTTCTGATTCAGAACACAAAAAAGAgaggttttgaagaatgttcatgctgctgcgttctactacactgtaaaaaaacaatattatacaaagccagaaaaaaaacactgcaggtaTGGCAAAGATGAAATTCAACTGCACATGTGCATATGACTTACTTTCCGGTGTGGAACACAAAAAGGAGAGGTTTAGAAGAATGTTCACGCTGCCCTGTTCTACTGCTAAATTGCAACAAAATTTAATGACAAAAGGTCAAgacttttttttgggggggggctgTGTAGCATCGAAAATTCAACGGTATACTGCTTTCTGTCTGGTGTAAAACAAtacttaaatgtcaataaaagacaCTTTGTTAAACAGTAGTTCAACATAAAAAGTCACACCAacatgcaattcacaaccgtgaATACgcgtgaatcacaaaatacggaaactgctCATTAACATATTATtacaacgcacacacacacttcacagaATGAAGATGCATGGACAGGGCaaagtggac
>TCONS_00049292
TGTCTTTGGCATGGTCAGAAAACGCACTACAGTTATGGAGAAGCTGAAAATTCAACTGCATTCCACTTTTTGGTGCAGAACACAAAAAGGAAAGGTTTAGAAGAATGTTCCCGCTGCCCTGttctaatacactgtaaaaataaatgaaatgtcaaaGTTTGGGGTGGGATAGGGTGTTTCGTTAGCATGGTCAGAAAACAGATTACAGTTAGGGAGAAGCAGAAAATTCAACTGCATTTCTGATGCGGAACACATAAAAGGAGAGGTTTAGAAGAATGTTTGCGCTGCCCTGTTctataatattgtaaaaattgaatgagtgtgtgacaTTGGCTCGTTATAGAGAAATTTCAACTGCTGAAATTTAACTGCATACAATCTAAatcaaaacaaagaaagaaaggagaGGTTTCAAAGAATGTTTGTGCTGCCTTGTTTTACTGCAcagtaaaaatgtaatgacaGAAAGTTTGGGGCTGGGTTGTGTGTCTTCGGCATGGTCAGAAAACATACCACAGTTATTTTGTCTGCTTTCCGGTGCAGAGCACAAAAAATGAGAGGTTCAGAAGAATGTTCGTGCTGCCCTGttcttctacactgtaaaaaaatgtaatgacaaaaagttaGGGCTTGGGTTGGATTGTGTCATTGGCATGGTCAGAAAACACACTACAGTTAAGGAGAAGCTGAAAATTCAACTGCATTTCTGGTGCGGAACACACAAAAAGAGATTTAGaagaatgttcatgctgctctgTTCTTCTACACTAAGAAATTGAATGACACAGTTTGGGGTTGGGTGGTGTGTCGTTGGCATGGTCAGGAAACGCAATACAGTTATGGAGAAGCTGATATTCAGCTGCATACAGCTTACTTTCTGGTGCAGAAAAAATAAAGGAGAGGTTTAGAAGAATGTGCATGCTACCCTGTTTGTCTACACTAAAAAAAAGTTGAATGACAAAAAGTTTGGGGCGGGGTAGGGTTTCGTTGGCTTGGTCAGAAAACATACCACAGTTATAAAGAAGCTGGAAATTTAACTGCATTTCTGATGCGGAACACAAAACCTGAGTTTTACAAGAATGTTCGCACTGCCCTGTTCTATAATACGGTAAAAAGTGGAATAAGTGGCATGAGAAGAAATCACACCATAGTTGTGGAGAAGCTTTAACTGCTGAAAATCAGCTGCACACGACTTGAAACGACTTTCTGATTCAGAACACAAAAAAGAgaggttttgaagaatgttcatgctgctgcgttctactacactgtaaaaaaacaatattatacaaagccagaaaaaaaacactgcaggtaTGGCAAAGATGAAATTCAACTGCACATGTGCATATGACTTACTTTCCGGTGTGGAACACAAAAAGGAGAGGTTTAGAAGAATGTTCACGCTGCCCTGTTCTACTGCTAAATTGCAACAAAATTTAATGACAAAAGGTCAAgacttttttttgggggggggctgTGTAGCATCGAAAATTCAACGGTATACTGCTTTCTGTCTGGTGTAAAACAAtacttaaatgtcaataaaagacaCTTTGTTAAACAGTAGTTCAACATAAAAAGTCACACCAacatgcaattcacaaccgtgaATACgcgtgaatcacaaaatacggaaactgctCATTAACATATTATtacaacgcacacacacacttcacagaATGAAGATGCATGGACAGGGCaaagtggac
>TCONS_00049293
GTTTCGTTAACATGGTCAGAAAACACTACAGTTAGGGAGAAGCCAAAAATTCAACTGCATCTCTGATGCGGAACACATAAAAGGAGAGGTTTAGAAGAATGTTTGCGCTGCCCTGTTctataatattgtaaaaattgaatgagtgtgtgacaTTGGCTCGTTATAGAGAAATTTCAACTGCTGAAATTTAACTGCATACAATCTAAatcaaaacaaagaaagaaaggagaGGTTTCAAAGAATGTTTGTGCTGCCTTGTTTTACTGCAcagtaaaaatgtaatgacaGAAAGTTTGGGGCTGGGTTGTGTGTCTTCGGCATGGTCAGAAAACATACCACAGTTATTTTGTCTGCTTTCCGGTGCAGAGCACAAAAAATGAGAGGTTCAGAAGAATGTTCGTGCTGCCCTGttcttctacactgtaaaaaaatgtaatgacaaaaagttaGGGCTTGGGTTGGATTGTGTCATTGGCATGGTCAGAAAACACACTACAGTTAAGGAGAAGCTGAAAATTCAACTGCATTTCTGGTGCGGAACACACAAAAAGAGATTTAGaagaatgttcatgctgctctgTTCTTCTACACTAAGAAATTGAATGACACAGTTTGGGGTTGGGTGGTGTGTCGTTGGCATGGTCAGGAAACGCAATACAGTTATGGAGAAGCTGATATTCAGCTGCATACAGCTTACTTTCTGGTGCAGAAAAAATAAAGGAGAGGTTTAGAAGAATGTGCATGCTACCCTGTTTGTCTACACTAAAAAAAAGTTGAATGACAAAAAGTTTGGGGCGGGGTAGGGTTTCGTTGGCTTGGTCAGAAAACATACCACAGTTATAAAGAAGCTGGAAATTTAACTGCATTTCTGATGCGGAACACAAAACCTGAGTTTTACAAGAATGTTCGCACTGCCCTGTTCTATAATACGGTAAAAAGTGGAATAAGTGGCATGAGAAGAAATCACACCATAGTTGTGGAGAAGCTTTAACTGCTGAAAATCAGCTGCACACGACTTGAAACGACTTTCTGATTCAGAACACAAAAAAGAgaggttttgaagaatgttcatgctgctgcgttctactacactgtaaaaaaacaatattatacaaagccagaaaaaaaacactgcaggtaTGGCAAAGATGAAATTCAACTGCACATGTGCATATGACTTACTTTCCGGTGTGGAACACAAAAAGGAGAGGTTTAGAAGAATGTTCACGCTGCCCTGTTCTACTGCTAAATTGCAACAAAATTTAATGACAAAAGGTCAAgacttttttttgggggggggctgTGTAGCATCGAAAATTCAACGGTATACTGCTTTCTGTCTGGTGTAAAACAAtacttaaatgtcaataaaagacaCTTTGTTAAACAGTAGTTCAACATAAAAAGTCACACCAacatgcaattcacaaccgtgaATACgcgtgaatcacaaaatacggaaactgctCATTAACATATTATtacaacgcacacacacacttcacagaATGAAGATGCATGGACAGGGCaaagtggac

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049290 False 2207 lncRNA 0.40 2 36448584 36451721
TCONS_00049291 False 1985 lncRNA 0.39 2 36448954 36451721
TCONS_00049292 False 1715 lncRNA 0.39 2 36449078 36451721
TCONS_00049293 True 1538 lncRNA 0.39 2 36449388 36451721

Neighbor

gene id symbol gene type direction distance location
XLOC_024325 ankrd27 coding upstream 10659 36405021 ~ 36437925 (+)
XLOC_024324 NA coding upstream 44544 36398512 ~ 36404040 (+)
XLOC_024323 NA coding upstream 65246 36376136 ~ 36383338 (+)
XLOC_024322 zgc:173552 coding upstream 98600 36349574 ~ 36349984 (+)
XLOC_024321 hist1h2a3 coding upstream 99572 36348401 ~ 36349012 (+)
XLOC_024327 FO904923.1 coding downstream 5079 36456800 ~ 36456918 (+)
XLOC_024328 CABZ01088576.1 coding downstream 57953 36509674 ~ 36509789 (+)
XLOC_024329 mafb coding downstream 222994 36674715 ~ 36676981 (+)
XLOC_024330 NA coding downstream 274869 36726590 ~ 36737258 (+)
XLOC_024331 CU929365.1 coding downstream 392406 36844127 ~ 36844249 (+)
XLOC_023973 CR762411.1 misc upstream 21230475 15217824 ~ 15218109 (+)
XLOC_024301 NA non-coding upstream 174997 36269642 ~ 36273587 (+)
XLOC_024299 CABZ01089081.1 non-coding upstream 347875 36096364 ~ 36100709 (+)
XLOC_024297 NA non-coding upstream 433422 36011421 ~ 36015162 (+)
XLOC_024339 CU207301.3 non-coding downstream 879407 37331128 ~ 37337143 (+)
XLOC_024296 NA non-coding upstream 433148 35988910 ~ 36015436 (+)

Expression


Co-expression Network