XLOC_024299 (CABZ01089081.1)


Basic Information

Item Value
gene id XLOC_024299
gene name CABZ01089081.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36096364 ~ 36100709 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048111
ATGGCACCGTATATTGCTCGTGTATATAAACAAGACGTGAACGAGTCAATTCTCGCGCGCGTCAGTTCAGTTTTGCTATCGCGCATGCGCGTCACGCAAGCGGCCGCGTTTGTCCAAGGCTGTCGTTTACAGGAGCCGCGGGTGATGCCTGTTACTCAAACTGACAGCTTCTGTCGACTCCAGGAATCAACAAGGCCACGAGTTCAGCTCATGTTAGGCCTCAAGagACAAGTCTTGTTAGAAGCCTAACAGGTATTCTGGTGCTGTGTTTGTTTTGGCTGCTGAAGTAGACCGGCAGACTTTATCCTTGGCCAGAATGATTGATTGGACCTTTTGTTTCCATTTACCCTTGAGGGCAGAGAGTCGGTATATCCATTATTTATGTCCGCCTCGGTGTGGAGTCGTCCGCTTGGCCCCGTGTTCCTCCGGCCTTTATGACATAAACCTCCACTGAGAGAATGTTTCAACAGAGAGAAAATATAGCAGCGAAATCCATCAAACATAACCCGGTCACAGGTCCGCTCCACACATCACCTTTACAGCGGAGCGGGAATCGCTCTTTCTGGGATATCAGCGCTCAAAAGAGACTGTAATTATTGAAATTAATGATGGTAAACGACTGTGGCTGAACACATTTCTCTCCGGGTGGGTGTGTGAGGTTTACTTTTTAAAGCATGTCCTGTGGAGAAATACCCTGTAATTACACATCGATATACAGTAACCAATGCAATCTCAAGACAATTCGTAGATTTTTGATTTACTGGGTATTTCGTGTGAGTTTGTACGatcttgtttttatattttagtatgatttgcttattccCCCAATGACAGGTGGGGTTTGGCGTCACGCCTCCTTTTCATGAGTGAAACTGTATGAATTTTAT

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0009451 RNA modification biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117516

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048111 True 887 lncRNA 0.46 3 36096364 36100709

Neighbor

gene id symbol gene type direction distance location
XLOC_024298 rpgrip1l coding upstream 9955 36045072 ~ 36086409 (+)
XLOC_024296 NA coding upstream 80928 35988910 ~ 36015436 (+)
XLOC_024297 NA coding upstream 81202 36011421 ~ 36015162 (+)
XLOC_024295 hsd17b2 coding upstream 145829 35942867 ~ 35950535 (+)
XLOC_024294 gpia coding upstream 157368 35913614 ~ 35938996 (+)
XLOC_024300 irx5b coding downstream 51506 36152215 ~ 36157484 (+)
XLOC_024301 NA coding downstream 168933 36269642 ~ 36273587 (+)
XLOC_024302 CR354435.3 coding downstream 178448 36279157 ~ 36303715 (+)
XLOC_024303 bmb coding downstream 191348 36292057 ~ 36310015 (+)
XLOC_024304 hist1h2a3 coding downstream 210624 36311333 ~ 36311719 (+)
XLOC_023973 CR762411.1 misc upstream 20878255 15217824 ~ 15218109 (+)
XLOC_024292 BX957352.1 non-coding upstream 214833 35881415 ~ 35881531 (+)
XLOC_024288 NA non-coding upstream 504299 35588157 ~ 35592065 (+)
XLOC_024287 NA non-coding upstream 519821 35572873 ~ 35576543 (+)
XLOC_024323 NA non-coding downstream 275427 36376136 ~ 36383338 (+)
XLOC_024324 NA non-coding downstream 297803 36398512 ~ 36404040 (+)
XLOC_024326 NA non-coding downstream 347875 36448584 ~ 36451721 (+)
XLOC_024327 FO904923.1 non-coding downstream 356091 36456800 ~ 36456918 (+)

Expression


Co-expression Network