RNA id: TCONS_00049290


Basic Information

Item Value
RNA id TCONS_00049290
length 2207
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_024326
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36448584 ~ 36451721 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAATCACTAATTTAGTGCCAGCCATGGCATTCTGCCGGGGGGCACATACACAGGGATACAAGGCTGTGTACACACTTATGAGGGCGGACAGCACTGGATGAACCTCTGCAGATCGCCTTGTGTCTTTTAGTGTCAGGGTCGAATCAAAACAAACACTAACTTCCTGCGCTCGCTTCACACATCAGCCTGGGCCAGAAAACACACACCGCAGTTATGCTGTATACCGCTTACTTTCTGCTGCAAGACACAAAAAAGGAGAGGCTTAGAAGAATGTTCCTGCTGCCCTGTTCTACGACACTGTAAAgaattgaatgagtgtgtggtaCTGGCATGTACAGAAACCACAGCATAGTTATGGAGAAGCTGAAAATCAACTGCAAACAACTTGCTTTCTGATTCAGAACACAAAAAGAAAaggttttgaagaatgtttgtgcTGCCCTGTTTTACTACAcagtaaaaatgtaatgacaaagttTGGGGCTGGGTTGTGTGTCTTTGGCATGGTCAGAAAACACTACAGTTATGGAGAAGCTGAAAATTCAACTGCATTCCACTTTTTGGTGCAGAACACAAAAAGGAAAGGTTTAGAAGAATGTTCCCGCTGCCCTGttctaatacactgtaaaaataaatgaaatgtcaaaGTTTGGGGTGGGATAGGGTGTTTCGTTAGCATGGTCAGAAAACAGATTACAGTTAGGGAGAAGCAGAAAATTCAACTGCATTTCTGATGCGGAACACATAAAAGGAGAGGTTTAGAAGAATGTTTGCGCTGCCCTGTTctataatattgtaaaaattgaatgagtgtgtgacaTTGGCTCGTTATAGAGAAATTTCAACTGCTGAAATTTAACTGCATACAATCTAAatcaaaacaaagaaagaaaggagaGGTTTCAAAGAATGTTTGTGCTGCCTTGTTTTACTGCAcagtaaaaatgtaatgacaGAAAGTTTGGGGCTGGGTTGTGTGTCTTCGGCATGGTCAGAAAACATACCACAGTTATTTTGTCTGCTTTCCGGTGCAGAGCACAAAAAATGAGAGGTTCAGAAGAATGTTCGTGCTGCCCTGttcttctacactgtaaaaaaatgtaatgacaaaaagttaGGGCTTGGGTTGGATTGTGTCATTGGCATGGTCAGAAAACACACTACAGTTAAGGAGAAGCTGAAAATTCAACTGCATTTCTGGTGCGGAACACACAAAAAGAGATTTAGaagaatgttcatgctgctctgTTCTTCTACACTAAGAAATTGAATGACACAGTTTGGGGTTGGGTGGTGTGTCGTTGGCATGGTCAGGAAACGCAATACAGTTATGGAGAAGCTGATATTCAGCTGCATACAGCTTACTTTCTGGTGCAGAAAAAATAAAGGAGAGGTTTAGAAGAATGTGCATGCTACCCTGTTTGTCTACACTAAAAAAAAGTTGAATGACAAAAAGTTTGGGGCGGGGTAGGGTTTCGTTGGCTTGGTCAGAAAACATACCACAGTTATAAAGAAGCTGGAAATTTAACTGCATTTCTGATGCGGAACACAAAACCTGAGTTTTACAAGAATGTTCGCACTGCCCTGTTCTATAATACGGTAAAAAGTGGAATAAGTGGCATGAGAAGAAATCACACCATAGTTGTGGAGAAGCTTTAACTGCTGAAAATCAGCTGCACACGACTTGAAACGACTTTCTGATTCAGAACACAAAAAAGAgaggttttgaagaatgttcatgctgctgcgttctactacactgtaaaaaaacaatattatacaaagccagaaaaaaaacactgcaggtaTGGCAAAGATGAAATTCAACTGCACATGTGCATATGACTTACTTTCCGGTGTGGAACACAAAAAGGAGAGGTTTAGAAGAATGTTCACGCTGCCCTGTTCTACTGCTAAATTGCAACAAAATTTAATGACAAAAGGTCAAgacttttttttgggggggggctgTGTAGCATCGAAAATTCAACGGTATACTGCTTTCTGTCTGGTGTAAAACAAtacttaaatgtcaataaaagacaCTTTGTTAAACAGTAGTTCAACATAAAAAGTCACACCAacatgcaattcacaaccgtgaATACgcgtgaatcacaaaatacggaaactgctCATTAACATATTATtacaacgcacacacacacttcacagaATGAAGATGCATGGACAGGGCaaagtggac

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048138 lncRNA upstream 26639 36418777 ~ 36421945 (+) True XLOC_024325
TCONS_00049289 lncRNA upstream 44544 36398512 ~ 36404040 (+) True XLOC_024324
TCONS_00049288 lncRNA upstream 65246 36376136 ~ 36383338 (+) True XLOC_024323
TCONS_00048116 lncRNA upstream 145558 36300651 ~ 36303026 (+) True XLOC_024303
TCONS_00049287 lncRNA upstream 174997 36269642 ~ 36273587 (+) True XLOC_024301
TCONS_00049294 lncRNA downstream 274869 36726590 ~ 36737201 (+) False XLOC_024330
TCONS_00049065 lncRNA downstream 276787 36728508 ~ 36737258 (+) True XLOC_024330
TCONS_00048154 lncRNA downstream 879407 37331128 ~ 37337143 (+) True XLOC_024339
TCONS_00048168 lncRNA downstream 1014936 37466657 ~ 37476172 (+) False XLOC_024345
TCONS_00048167 lncRNA downstream 1014936 37466657 ~ 37476172 (+) True XLOC_024345
TCONS_00048137 mRNA upstream 10659 36411624 ~ 36437925 (+) False XLOC_024325
TCONS_00048136 mRNA upstream 19981 36405021 ~ 36428603 (+) False XLOC_024325
TCONS_00048135 mRNA upstream 98600 36349574 ~ 36349984 (+) True XLOC_024322
TCONS_00048134 mRNA upstream 99572 36348401 ~ 36349012 (+) True XLOC_024321
TCONS_00048133 mRNA upstream 101084 36347126 ~ 36347500 (+) True XLOC_024320
TCONS_00048141 mRNA downstream 222994 36674715 ~ 36676981 (+) True XLOC_024329
TCONS_00048143 mRNA downstream 675200 37126921 ~ 37137446 (+) False XLOC_024332
TCONS_00048144 mRNA downstream 678729 37130450 ~ 37134912 (+) True XLOC_024332
TCONS_00048145 mRNA downstream 757898 37209619 ~ 37215844 (+) True XLOC_024333
TCONS_00048146 mRNA downstream 817179 37268900 ~ 37277392 (+) True XLOC_024334
TCONS_00048100 other upstream 567053 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048053 other upstream 1657118 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048052 other upstream 1658965 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048029 other upstream 2667956 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048028 other upstream 2719186 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048139 other downstream 5079 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048140 other downstream 57953 36509674 ~ 36509789 (+) True XLOC_024328
TCONS_00048142 other downstream 392406 36844127 ~ 36844249 (+) True XLOC_024331
TCONS_00048157 other downstream 914977 37366698 ~ 37366955 (+) False XLOC_024341
TCONS_00048162 other downstream 983640 37435361 ~ 37439792 (+) False XLOC_024342

Expression Profile

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