Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00048116 |
| length | 861 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 2 |
| gene id | XLOC_024303 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 36292057 ~ 36310015 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0061472 | karyomere membrane fusion | biological_process |
| GO:0007344 | pronuclear fusion | biological_process |
| GO:0000741 | karyogamy | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0031965 | nuclear membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-030131-5577 | Acts upstream of or within karyomere membrane fusion and pronuclear fusion. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blastomere. |
| ensembl_id | ENSDART00000152505 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049287 | lncRNA | upstream | 27064 | 36269642 ~ 36273587 (+) | True | XLOC_024301 |
| TCONS_00048111 | lncRNA | upstream | 199942 | 36096364 ~ 36100709 (+) | True | XLOC_024299 |
| TCONS_00049285 | lncRNA | upstream | 285215 | 35988910 ~ 36015436 (+) | True | XLOC_024296 |
| TCONS_00049286 | lncRNA | upstream | 285489 | 36011421 ~ 36015162 (+) | True | XLOC_024297 |
| TCONS_00049284 | lncRNA | upstream | 361979 | 35931018 ~ 35938672 (+) | False | XLOC_024294 |
| TCONS_00049288 | lncRNA | downstream | 73110 | 36376136 ~ 36383338 (+) | True | XLOC_024323 |
| TCONS_00049289 | lncRNA | downstream | 95486 | 36398512 ~ 36404040 (+) | True | XLOC_024324 |
| TCONS_00048138 | lncRNA | downstream | 115751 | 36418777 ~ 36421945 (+) | True | XLOC_024325 |
| TCONS_00049290 | lncRNA | downstream | 145558 | 36448584 ~ 36451721 (+) | False | XLOC_024326 |
| TCONS_00049291 | lncRNA | downstream | 145928 | 36448954 ~ 36451721 (+) | False | XLOC_024326 |
| TCONS_00048112 | mRNA | upstream | 143167 | 36152215 ~ 36157484 (+) | True | XLOC_024300 |
| TCONS_00048110 | mRNA | upstream | 214242 | 36046287 ~ 36086409 (+) | True | XLOC_024298 |
| TCONS_00048109 | mRNA | upstream | 219073 | 36045072 ~ 36081578 (+) | False | XLOC_024298 |
| TCONS_00048108 | mRNA | upstream | 350116 | 35942867 ~ 35950535 (+) | True | XLOC_024295 |
| TCONS_00048105 | mRNA | upstream | 361655 | 35913614 ~ 35938996 (+) | False | XLOC_024294 |
| TCONS_00048117 | mRNA | downstream | 8307 | 36311333 ~ 36311719 (+) | True | XLOC_024304 |
| TCONS_00048118 | mRNA | downstream | 9433 | 36312459 ~ 36312869 (+) | True | XLOC_024305 |
| TCONS_00048119 | mRNA | downstream | 12101 | 36315127 ~ 36315438 (+) | True | XLOC_024306 |
| TCONS_00048120 | mRNA | downstream | 13254 | 36316280 ~ 36322775 (+) | True | XLOC_024307 |
| TCONS_00048121 | mRNA | downstream | 22767 | 36325793 ~ 36326104 (+) | True | XLOC_024308 |
| TCONS_00048100 | other | upstream | 419120 | 35881415 ~ 35881531 (+) | True | XLOC_024292 |
| TCONS_00048053 | other | upstream | 1509185 | 34791362 ~ 34791466 (+) | True | XLOC_024254 |
| TCONS_00048052 | other | upstream | 1511032 | 34775558 ~ 34789619 (+) | True | XLOC_024253 |
| TCONS_00048029 | other | upstream | 2520023 | 33780513 ~ 33780628 (+) | True | XLOC_024239 |
| TCONS_00048028 | other | upstream | 2571253 | 33729284 ~ 33729398 (+) | True | XLOC_024238 |
| TCONS_00048139 | other | downstream | 153774 | 36456800 ~ 36456918 (+) | True | XLOC_024327 |
| TCONS_00048140 | other | downstream | 206648 | 36509674 ~ 36509789 (+) | True | XLOC_024328 |
| TCONS_00048142 | other | downstream | 541101 | 36844127 ~ 36844249 (+) | True | XLOC_024331 |
| TCONS_00048157 | other | downstream | 1063672 | 37366698 ~ 37366955 (+) | False | XLOC_024341 |
| TCONS_00048162 | other | downstream | 1132335 | 37435361 ~ 37439792 (+) | False | XLOC_024342 |
