RNA id: TCONS_00048110


Basic Information

Item Value
RNA id TCONS_00048110
length 8616
RNA type mRNA
GC content 0.44
exon number 25
gene id XLOC_024298
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36045072 ~ 36086409 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTAAAGGATGTTTTCTCGTGCTGATGAAACTGCTGCTGATATTCCTGTTAGAGACACAAATGGAGCTGCATTACCAGACTCCCTGCTGTCTCAGAACATCAGAGAGAGGCAGAACGTGTCCAAGTTGAGCCGGGAGGAGCTGGAGGACAAATACCTGCGGCTGCAGGATGAAAACCTCACGCTTAAacaacacacatgcaaacaagaAGACAAGATCCGCAGgatGGCCACCAAGTTGATCCGTCTGGTGAAGGACCGTAAGCAGCGTGATGGAGGGCGCGATGTGGAGATGGAGGAGATGATGGAGGAGCTGCAGGAGAAGGTGCAGGAGCTGGAGAAGCAGAACGAGGGCCTGAAGCGACGTCTGCTAGCGGCCAAACAGCAGCTGCAGGTCCAGAGTCGCAGACACACGCCATACGCACACATACAGTCACGCATCAACACAGGCCTCCGCAGAgtcccagacacacacacaccggtgaCCACCTCACGGCCACACACTCCGAAAGCAGCTCTCAGGCATGTTGAGGGAGAAATGAGTGCGAAGCCACCGCAGAGTTTGTTGCCGCGTTATGGACACAGCCTGCTGGACGAGGCCCGGGCTGAAATCCGCAACCTGGAGAATGTGATCGAGAGCCAGCAGATGCAGATGGAGGAGCTGGAGAGGTCAGCAGAGATGATGAGAGATCAGCTGAAGAGGAGAGACAGAGAGTTTGAGGAGTCGCTGCTACAGGTCCGAGAACAGCAGGCCAGCGGACAGAGGTTGACCATAAAGGATAACGTGGAGATGATCAAGCTACAGAAGCTGTTGTCAGAGAAGGCAAACACACTCGCAGTGCTGGAAGGAAGATTTCTGCAGCAGCAGGAGAGCATGAAGACTCTAAAGGCCAGTCACGATGCTGCGCTGCTGAAGGTGGAGGATGGCAACCGGCAGCTGAAGGAGGAGAGACTGAAGAGTTTACAGCTGGAGACACAGATCACCAGCAGAGCCCTGGAGCACAGACACCTGCtggagTTACAAGAGAGAATCCAGGAtttggagaaagagagagacttgCTCAAAGAAAACTGCGATAAACTAGTGAAAAGTGCGTTTGATGTGAGTCAGGAGCAGAAATGGAGGACGAGAGAACAGCAGCTCAAACTACAGGTCGCTCAGCTGGAGACGGCGTTAAAGTCTGACCTCGCTGATAAAAACCAGATCCTGGATAAGATCAAGGCAGAGAGAGATGTAAATGAAAACCTGACGCAGGAAAACAAGCAACTTCAGCTGCGCTACCTCGAGCAGAAACAGCAACTGGAGGAAATTAAAGATCGCATGAAGTTCTTCACCAAGGAAAGTGAAATCGATGCGGCTGAACTCAGCGAAGCCCTGATGCTTATCAAGGTCCGTCGTAGTCAGAAGAGCGGAGAGCTTGGATTCTTAGAGAAGGTGGAGGAAGATGTGAAGGTGGACGTGGAGCGATCTTTGAAGGAACTGCAGGCCACTTACGCGGAGACGGTTCAAGAGCTGGAGAAGACCAGGAACATGCTCATCATCCAGCACAAGATCAATAAAGACTACCAGGCTGAAGTCGAAGCAGTCAATCGTATGATGGATGATCTGAAACTGGAGTATGAGTTAAAGTCAGAGAAGTTGGCTCAGCTTCTGGACATGAGAGCTGCCAAGATAAGAAAACTTGAAGCCCAGCTGAAAGACATTGCATACGGGACCAAGACCCATGTTTTCAGGCCAGATGAAACCAGTGATGATGTTACAGATGAGTTTGAAGGAACCGTCCAACTAGCCCGAGGCGAGAATCTTCTGGAAATCCACTTGGGCAAAGGCCAGTTTTCACCTGAAGCTGTAGAAAGTTTAAAGGACAAAGACCCGTCCACCTTCTGCACATATGCCTTTTACGACTTCGAGCTTCAGTCCACACCTGTGGTTCATGGTGAACGTCCAGACTACAGCTTCTCGTCTCAGTATCTTGTGAGAGTGGATGATCTCTTCTTGAATTATCTCCACACCAACTCCATTACAGTGGAGATTCAACTCGCCGAGGGGTTGAATTTTCGCACTGTGGCTGCTGGTCAAATCAGGTTAAATCAACTTCTGGAGCGAGATGGCAAGGTGTTTAGCACCATTCAGTTAGTTGGTGTTTCAGATGAGATCCAAGTGTTTGGTTCTCTTGAATACTGGCTCAAACTGAAGGTTTCTATGGATCAAGCCATTCGCCTTTACAAGGAGAGAGTCAAAGCACTTGGTTTCCTCAAAACAAGCCTGAGAGATAGCAAGgctTTCTCAGTTCCTGCTCCTAGTTCTTCATCACTGATGAATGGAGATCTCAATGAACTAAGCATCAGCATACACTCCTGCTGTAACCTCAAACCCAAAGGTCCTCACACCCAACCCAGTCCCTACATCGTTTACAAACTCTATGACTTTCCTGACCACGATACGCCAATAATACCTTGCACCACTGAGCCTCAGTTTGAGGATCACATGGTCTTCCCGATGACCATGAACTCCAACCTTGATGCCTTTTTGAGATCAGAGGCTCTGGTGGTTTATGTGTTTGATGATTTAGATGTTGAGAACCAGCTGTATTTGGGGAAGGCCAGAGTACCACTCGACTCACTGGCACACGATAAAACCATCACCGGTTTGTTTGAGCTGACAGACCCTGCAGGACTTCCCAGCGGCCAAATAAATGTGACGTTAAAATGGTCGTTTACATACCTTCCTCCATCGTCCACTGTTTTCAGCACACAACAGACACCAGAGAGACAAACTTCACATGAAAAGGACAAAATAGAGACCGAAACACATATGATTACAGAAGAGCTTCAGCCGTCGCTCTCTGAGACTCCAATGCCCAGACCCAGACAGCGAACACTACCGAAATCGACTATAAAAAGGGTTTCTTTTGTGGACGTCACAGAGCTTGAAAAACAGATGGAGCAACACACACCCACtgatgaagaagatgatgatgataatgaagagCAGAGGGCGCCTGTAACTCCTGCATCTAAGACTGTGATCAGACTGGATGCAGGATCATCTTCAGCGGTCAGTGAGGAAGAGGAAGATGAGGAAGAGTCTCAGTTTTCTGAAGGTCAGCTGATCACCGGCAGCTCTCAGTCTGAGGAGTCCGAGATCTCAGAGCAGCTGCAGACCGACGCACAggctgaggatgatgatgatgatgatagtgatgATTGCATCGTTCCTGCTCACAGCACACAGCAGAAAAAACAGCCGTCCGAGTGCATTCGTGTGGAGATTGTTTCTCTGAGTCTGAAGCCGGGCTCCAGGGTGGCGGAGGACAGTCGAATCGTTCGCTTGTTTGTGGAGTACGCTTTTCTGGGCCTGCAGTCGGTCGAGACCCCGCTGTCCTTAAAGAAACCTCTCCCGGGACGCAGCGTCTCCTACAACTTCAGCAACGTGATCCATGTGGATATGGAGAATAATCAGGCCAGGAGGCAAACTCTGAGGGCGGTGCTGGAGGGCCGGAACAGACAACTAGAGCATATAAAGTTCACTGTGGTGAGTGACCCTCCTGAGGAGGCGGAGCAAGAAGAGGAGTGTGAGGATGTGGGCGTGGCCTTCCTGCGGCTCCTCGACATCATGGACAGACGCAGAGACATGAAGGACGTCAGTGTGAACATTGTGGACGTTCAGGACAGCAGCGCCGTCATCGGTCATCTCGTGGTGACCGTCGAAGCTCTGGAGGCTTTAATGTCCATCATGAAGGATCCAGAGCGCGACCGTCCGCTCACCACGCTAGCTTAACTCACCCTGCATTAGCGCTCTCCCGTCAGCAATATTAAACACCCCTTCAGTGATTTTTGGCTGTTAATTAGATTTAGCGGCGTGTGGAAACGCTGCAGACGACATATGGGAACAAAACAGAGCTTTATGTAAACCTCTTTGAAGGCTGACGGTGTGAAATCGGATCCTAATGTTTCTCTTTCTGGCCTGCGGTGTTGCGTTTGATGGAGCGCCGATGTTTAGACCTTTAATAACTCCGCTTAATGAAAAGGCTGTTAAGGCTCATTAGGCCGCGGCGTGGCGGGCGGCGAGACTTTATTGAAGGTGCGAAATGAAATCTAACTGGATTTAATGGGATTAAATCAAGCTCTTTAAAATGCTAATGCGCATTTCCACACGCATCGGGCTGTGGCGtcgcacacactcatatacacacacatacatacacacacacacacacacacacacacacacacacacacacacacacacacatattaacacatatgcacataaacacacatacacacacacgcacatatatacatacacacacacatatatatacatacacacatacgcacatatagacatacacacacacacgcatgcacacatatacacacacacacacacatgcatatacacatatatacacatgcacgcacaaacacataaatatacaaataaacactCACATAAGCGCACAAACACAATCACAAAtatacacatgcacgcacacacacatatacatatatacacatacacgcacgcacatacacatttatacacacatatatacatacacatatacacacgcacatatacacacacacacacacacatatacacatatatatacacatacacatatatacatgcacatatacacacacacacacacatatacacatatatacatgcacatatacacacatacacacacacacacataaacacacatacatattcaTATTAACACatatgcacataaacacacatacacacacacacgcacatatatacatacacacacacatatatatacatacacacatacgcacatatagacatacacacacacacgcatgcacacatatacacacacacacacacatgcatatacacatatatacacatgcacgcacaaacacataaatatacaaataaacactCACATAAGCGCACAAACACAATCACAAAtatacacatgcacgcacacacacatatacatatatacacatacacgcacgcacatacacatttatacacacatatatacatacacatatacacacgcacatatacacacacacacacacacacacacacatatatacacatatatatacacatacacatatatacatgcacatatacacacacacacacacatatacacatatatatatatacacatacacatatatacatgcacatatacacacacacacacacacacacacacacacacacacacacacacacacacatatacacatacacatatatacatgcacatatacacacacacacacacgcatatacacatatatatacacatacacatatatacatgcacatatatacatacatacacgcaagcacatatatacacacacagatacacacacacacatacacataaatacatgcacatacacacacacacacttctgttgAGGTGTGAATGTCACTGCTGTCTGTCCTCTGTTCATTCAGGTCTGCCTAATGTTAATCAGTTCAGAGCATTAGTCTCTTGTATAGATCTAGATTTTGGATCTACTGTAAAGTTTTCTAGACGTCATATAAACtgatatttgtaaatgttttatatttatgaacGTTCAAGAGTGATAATGTTGTTCAAGGTTTTTAATGCCTCGTTTGTTTTTTCACTTCAAATCAAGAAGCTgtgatttgacttttttttttaaacaaaaaaaaaggacatTTACTGAGGAAAAAGGTGCTTTATATTAGAACTTTTTTTGCCCTCAatccccaaaatgacaatgccagtgactcgcaacccccaaaatcctcagaggtggttataaatatagaaCTATTTGAAAACCTTGCACACAACAAGACCTTAAAAAAAGGTTAAGTGTTGTGACTTTGAACAGTTAAAGTGGCTATAGCATTACCGTACgctcacaccgaaagcggcgagagcgtcaaagtagccggaagtcattcattttcaatgacagCTGGCGGCAAGGAGCAgtgcggcgcgtcttcgccggtgtgggcgtcgaggagagttgaaatcatgtcaactttatggtaatgagctatgacgtggttcggcggcaaccaatcagaatgaagacgtccaccgcttgataggagttcagagaccacagttgttcccaagggtttgatgattgcggtcgACGGATtcccaattatttacaatgttttcttacacgaacatgcattaaataatgtactggcgagttactgatgtgcgttaatgttatatatatatttatttttaaaaaagcggGGATCTCATGCGACGTGACAGTacagctgcttcaggatatttcagaaatatggacacatattggataaatagagcaaagccacaccacacgcaacttgatcttccattgttatatgaatttaataagaagtgcgcaacattttcacgctagataaatgttttatgcgggaatgtaactgatatgctgcaacggctcctttaaatacgagatcaatgtagcgagtatagacgccggagctgaaggcagacagcgttgtcgccagggcggccagagcgaccctgaacgctctcaccgctttcggtgtgaacgtacggttactcTTTTTAACGCAATGTAactcatattttattaaaataattcatattcattCTCTAGAAATGCATCCGCAGACATTTCAGTAAGTTTGATGGAGCTCTCAGTTAACCTGCTCTACTGTACGTCAGTATTGGACACGGTCCTGCCTAAAGTCCACATCAGCCAGAAGCTGAGACTATTTTATATTtccgtattgtgatgcagttcctagagaaacggaatattaaatgagacaacagtgggcgtggcttgttttttctactgcgagctgattggatgtagaaaAGTAGGCGTGTCCCTCAGAAAGATGGGGGGAAGGGTTTGAGGAGAGTTATGACaccctaacagactcctcctcctcaccgtTACTGTTTATTGTCATAGCGATGGAGAGGCGTGGTTAAGTAttttagccacgcccaatacctgaGACTGAAATAGTCtgataatttaactgaaaacaaacaggaagtgcttttttttttttagatttacatGAATGATTACAAGAGCAGACGATTGTTTTCATCTCagtgacatgcacagatgaattgttcagcagCAGAATCAATATGGCTAGTTTTGAATTCATGAGTGCTTTAATGATCTCTCTTTACGTGTGCTCATATGTTCAGCCGAGCGCCCTCATTAGTGCGCACTGGACTTGATCAATATCAGAGGTGGATTCTGAACACCGCCGCCCTTCGCTCTCATCACATGTCCCCCATGCAAATGACCCCTGAAAGCAGCAGAGGAAGCGTCCCGCGGGGGCTCATTAGCCATTCAGAGCTAAGATGTAGGGCGGGTTGTGTTGTCATGTGCTGAGGATTGGAGCGCAGCCCTTTGACAGCTGTGACAGGCGGGTGGGTGGCCTTACGTTCCCCCCGTATACACTCGGCCCATCTGTCAAAATCACCGCCGAGCACTCTGGGAAAAAAAGCATACACCGCCGCTCCTCAATTAGACGTGTTACGACTAGAGGGAAGTGTCATTGTGCTGACATGGATAACCTGAGAGCCGCAAAGGCCACTTAACACTGGCAGATACTAAATGAATCCAAAGTGGAGCCGGTCGGAAATATCATTTCCCTCACCTTGGGGttttcttaaagggacattttACCCAAACATAAGCTCCGCCATCATTTACTTGCTCTTTACTTGTTCCAGACCTgttaatgttgatgtctggtgactgggctggccaatcctggagcactttgaccttctttgagctttgatgtggaggctgaagtatgaggagcgctatcctgctggagaattgtccctctcctgtggtttgtaatgtaatgggcagcacagatgtcttgatacctcaggctgttgatgttgcagatctctcgcacgcccccatactgaatgtaaccccaaaccatgatctcttcttcaccaaacttgacagatttctgtgtgaatcttggtccatgctggttccagtaggtcttctgcagtatttgtggtgaTTAGGATGCAGATCAATAGATGATCCATAAGGAAAATCAACCTTGGGATGTTGGGATCCACCACAAGAcgtttgtcaagtagtgtataagataatgtgtatatttatgatAATGGTGTCCTGCGCTCTGCGTGTGTGTCTCTCAGCTCTTCACCTTCAACTCTCCTCAGTGTTTTCTCCTCCGTCTGCAGTGTCTGGATCTCCGACTTGTCTGGAAGTCACTGACCTGTCTGTGTTTTTTATTTCACTGTCATCCGCATGGTCAGGGGTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatgtatatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtgtgtgtgtgtgtgtatacaatgtatgtgtatgtatatatatatatatatatatacttatatatatatatatgtatatatatatatactatatatatatatatatatata

Function

GO:

id name namespace
GO:1905515 non-motile cilium assembly biological_process
GO:0046548 retinal rod cell development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0032391 photoreceptor connecting cilium cellular_component
GO:0035869 ciliary transition zone cellular_component

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081104-81 Acts upstream of or within embryonic pattern specification. Predicted to be located in cilium. Predicted to be active in photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in several diseases, including Joubert syndrome 7; Meckel syndrome 5; anencephaly; retinitis pigmentosa 3; and vascular dementia. Orthologous to human RPGRIP1L (RPGRIP1 like).

Ensembl:

ensembl_id ENSDART00000185324

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049285 lncRNA upstream 30851 35988910 ~ 36015436 (+) True XLOC_024296
TCONS_00049286 lncRNA upstream 31125 36011421 ~ 36015162 (+) True XLOC_024297
TCONS_00049284 lncRNA upstream 107615 35931018 ~ 35938672 (+) False XLOC_024294
TCONS_00048107 lncRNA upstream 107615 35931921 ~ 35938672 (+) True XLOC_024294
TCONS_00048106 lncRNA upstream 113987 35931018 ~ 35932300 (+) False XLOC_024294
TCONS_00048111 lncRNA downstream 9955 36096364 ~ 36100709 (+) True XLOC_024299
TCONS_00049287 lncRNA downstream 183233 36269642 ~ 36273587 (+) True XLOC_024301
TCONS_00048116 lncRNA downstream 214242 36300651 ~ 36303026 (+) True XLOC_024303
TCONS_00049288 lncRNA downstream 289727 36376136 ~ 36383338 (+) True XLOC_024323
TCONS_00049289 lncRNA downstream 312103 36398512 ~ 36404040 (+) True XLOC_024324
TCONS_00048108 mRNA upstream 95752 35942867 ~ 35950535 (+) True XLOC_024295
TCONS_00048105 mRNA upstream 107291 35913614 ~ 35938996 (+) False XLOC_024294
TCONS_00048102 mRNA upstream 136661 35889134 ~ 35909626 (+) False XLOC_024293
TCONS_00048112 mRNA downstream 65806 36152215 ~ 36157484 (+) True XLOC_024300
TCONS_00048113 mRNA downstream 192748 36279157 ~ 36303715 (+) True XLOC_024302
TCONS_00048114 mRNA downstream 205648 36292057 ~ 36310015 (+) False XLOC_024303
TCONS_00048115 mRNA downstream 206056 36292465 ~ 36303049 (+) False XLOC_024303
TCONS_00048117 mRNA downstream 224924 36311333 ~ 36311719 (+) True XLOC_024304
TCONS_00048100 other upstream 164756 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048053 other upstream 1254821 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048052 other upstream 1256668 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048029 other upstream 2265659 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048028 other upstream 2316889 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048139 other downstream 370391 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048140 other downstream 423265 36509674 ~ 36509789 (+) True XLOC_024328
TCONS_00048142 other downstream 757718 36844127 ~ 36844249 (+) True XLOC_024331
TCONS_00048157 other downstream 1280289 37366698 ~ 37366955 (+) False XLOC_024341
TCONS_00048162 other downstream 1348952 37435361 ~ 37439792 (+) False XLOC_024342

Expression Profile

//