RNA id: TCONS_00048052


Basic Information

Item Value
RNA id TCONS_00048052
length 491
RNA type processed_transcript
GC content 0.55
exon number 6
gene id XLOC_024253
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34748125 ~ 34805144 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtgtgcctCTTTCTGCCGGAGCGGGAGTGTAGTATTTGGCTCCAACACCTCCATCAGGCTCACTTCTAAAGATTGAAGCGCTTTCTAGAGTCACAGCTGGGTTTCTAGCAGccgTCTGGAGCTGTGGTGGAGAATGATCCGCTCGGAGCTCTTCCTCCTGGATGGGagaAACGTCAGGACAATGGAAGAGTCTACTATGTCAATCACAACACTCGAACTACGCAGTGGGAGGATCCTCGAACCCAAGGGATGATCCAGGAGCCTCCCCTGCCGCCCGGCTGGGAGATGAAGTACACGGCAGAGGGGGTGCGATACTTTGTGGACCACAATTCTCGCACCACCACCTTTAAAGACCCTCGGCCGGGCTTTGAGTCAGGTTCGAGACAGGGTGGCTCTCCGGGCGCGTATGACCGCAGCTTCAGGTGGAAATATCACCAGTTCCGCTTCTTGTGTCATTCTAATGCTCTGCCCAGTCATGTGAAGATCTC

Function

GO:

id name namespace
GO:0045732 positive regulation of protein catabolic process biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0060021 roof of mouth development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0016874 ligase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-000607-82 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within roof of mouth development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in brain; germ ring; head; pectoral fin bud; and tail bud. Orthologous to human WWP2 (WW domain containing E3 ubiquitin protein ligase 2).

Ensembl:

ensembl_id ENSDART00000146669

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049064 lncRNA upstream 105856 34668706 ~ 34669702 (+) True XLOC_024252
TCONS_00049275 lncRNA upstream 252319 34510588 ~ 34523239 (+) True XLOC_024248
TCONS_00049276 lncRNA upstream 262614 34511205 ~ 34512944 (+) True XLOC_024249
TCONS_00048043 lncRNA upstream 263081 34511205 ~ 34512477 (+) False XLOC_024249
TCONS_00049274 lncRNA upstream 287750 34477938 ~ 34487808 (+) False XLOC_024247
TCONS_00048054 lncRNA downstream 21419 34811038 ~ 34816681 (+) False XLOC_024255
TCONS_00049277 lncRNA downstream 164781 34954400 ~ 34960247 (+) True XLOC_024261
TCONS_00049278 lncRNA downstream 256081 35045700 ~ 35125945 (+) True XLOC_024264
TCONS_00049279 lncRNA downstream 264894 35054513 ~ 35069608 (+) False XLOC_024268
TCONS_00049280 lncRNA downstream 331700 35121319 ~ 35153715 (+) True XLOC_024275
TCONS_00048050 mRNA upstream 12477 34749187 ~ 34763081 (+) False XLOC_024253
TCONS_00048048 mRNA upstream 25189 34748136 ~ 34750369 (+) False XLOC_024253
TCONS_00048046 mRNA upstream 125184 34641536 ~ 34650374 (+) True XLOC_024251
TCONS_00048045 mRNA upstream 160095 34581494 ~ 34615463 (+) True XLOC_024250
TCONS_00048044 mRNA upstream 181017 34576067 ~ 34594541 (+) False XLOC_024250
TCONS_00048055 mRNA downstream 21451 34811070 ~ 34833482 (+) True XLOC_024255
TCONS_00048056 mRNA downstream 55496 34845115 ~ 34859819 (+) False XLOC_024256
TCONS_00048057 mRNA downstream 55850 34845469 ~ 34859533 (+) True XLOC_024256
TCONS_00048058 mRNA downstream 72606 34862225 ~ 34870891 (+) True XLOC_024257
TCONS_00048059 mRNA downstream 98380 34887999 ~ 34900293 (+) False XLOC_024258
TCONS_00048029 other upstream 994930 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048028 other upstream 1046160 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048019 other upstream 1636358 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048011 other upstream 2164119 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00047980 other upstream 3794111 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048053 other downstream 1743 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048100 other downstream 1091796 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048139 other downstream 1667181 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048140 other downstream 1720055 36509674 ~ 36509789 (+) True XLOC_024328
TCONS_00048142 other downstream 2054508 36844127 ~ 36844249 (+) True XLOC_024331

Expression Profile

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