XLOC_024325 (ankrd27)


Basic Information

Item Value
gene id XLOC_024325
gene name ankrd27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36405021 ~ 36437925 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048136
GGTCCGTGTCAGTTTGGAGTGATCATCTGTTCGTGATTGTGACGGCAGTTGTCTGAAATGTTTTACATTCGCTCCCAAACTCCAATAAATGTTCTGTTTGCTACTTTATCCACCTGTACATAATCATATGAGGAGCTGGAGTTTGGGACACATATGGCTGTGTATGATGAGAATATCCTGAAAAACCCTTTTTACCAGGCTCTGGAGAAACACAGACCGGACCTGTGCAGCCGGGTGGCAGAGCTCCATGGCATTATCCTGGTACCGTGTTGTGGAAGTTTACCAACGGGCTCTTTTACTGCAGCTCAGTTTGACGGATACGTTCTTCAACCTTCCGAGCAGGGTTACCAGACTGTAGATGGAaagGAAGTGTCTATAAACAATAACCGGGTCCACCTGAGTGCAGGGTTGCCCAATCCTATCTCTGTCCCCATCCTGTTTGAGGAGACCTTCTACAATGAGAAAGAGCAGGCCTACAGTATACTGTGCATCGCACGGCCCTTCGAATCTGACCACATTCCTGCTGAGGAGTTGGGTTCTGTTCCTGCTCCGTACTGTCTGAAAAATATTGAGGATGTGAGGGAGTTTTTGGGCCGCCATGCTGAAAAACTGGACAAGTTTGTTTCCTCCTTCTGTCTCTCCTTTAAAGAACAGGAGAGGAAAGGCCTACGCCATCACATAGACTCGGTGAATACGCTTTACACCAGATGTCTTCAGTGTCTGCTGAGAGACTCTCGTCTGAAGCTTTTGGCGAGACAGGAGATTCAGATGACTCTACTCAAAGAAGCAGTAGAGATGTACATCCATCATGGCATCCATGATCTACTCTTTAGTTATGTGGGCACTCTTGAAGCTAGTCGGGATGCAGCGTTCAACAAAACAACACGGTCCTTGCAGGATCTGCAGCAGAAAGAGCTGGGAGTGAAGTCCGAGTTCAGTATTAATATTCCTCGGGCGAAGCGTGAGCTGATTCAGCTGAACGTCTGCACGTCTCCACAGCAGAAACTCCTCTGCATCCGGAAAGTCATTTTAACCATCATGCAGTCGACCAGACGCAGAGATACAGCGGTGAGCATCGAGTCCATGTGTGCCGATGATCTGCTGTTGGTCATTCTGTATCTGCTCATCAAGACAGAAATTCCCAACTGGATGGCCAATCTGAGTTATATAAAGCACTTCCGCTTTCGGAGCTCCAGCAAGGATGAGTTGAGTTACTGTCTGACGTCTTTCGAGGCCGCGGTCGAGTATATCAGCCTGGGAAACCTCAAACACAACACCGATGGGTCAGGAAACAGACTGTCCTTCAGGCAGAAGGTGGACCTACTGTCCCAGAATGCAACACCCATTGACCGGCTGTTTGAGCATATTGTGAGCGGAAATGAGCAGGAGGTTCAGCGTTTGCTCAGTGAAAGCGAGAGTGAGGAGGACGGCAGGAAGTTGTGTCACCCTCTGTGTTCCTGTGACGCCTGCGACCTGCGCATCTCTGGGAGATTGAATGATCCTTCCATCGTCACTCCATTCTCTCGAGACGACAGAGGATACACTCCTTTACATGTTGCTGCTATTTGTGGTCAGTCTCAGATGATTGATTTACTGGTGTCAAAGGGAGCAGTGGTAAACGCTACCGATTACCATGCACTCACACCGCTGCACCTCTCCTGCCAGAAGGGCTACCAGGGCGTCACGCTTCTCCTGCTGCATTATAAGGCCAACACTGATGCTCAGGACAACAATGGAAACACTCCTCTACATCTGGCCTGCATGTACGGACATGAAGACTGTGTGAAGGCGCTGGTGTACTTCGATCTGCACTGCTGTCGGCTGAACGTTCAGAACGATAAAGGAGACTCGCCGCTGCACATCGCCGCTCGCTGGGGATACGAGGGCATCATGGAGGTGCTGCTGGAGAACGGAGCGTCCACGCTCATCCACAATAAAGCCAAGGAGACGCCGCTGCACTGCGCGCTCAACTCCAAG
>TCONS_00048137
ATGGCTGTGTATGATGAGAATATCCTGAAAAACCCTTTTTACCAGGCTCTGGAGAAACACAGACCGGACCTGTGCAGCCGGGTGGCAGAGCTCCATGGCATTATCCTGGTACCGTGTTGTGGAAGTTTACCAACGGGCTCTTTTACTGCAGCTCAGTTTGACGGATACGTTCTTCAACCTTCCGAGCAGGGTTACCAGACTGTAGATGGAaagGAAGTGTCTATAAACAATAACCGGGTCCACCTGAGTGCAGGGTTGCCCAATCCTATCTCTGTCCCCATCCTGTTTGAGGAGACCTTCTACAATGAGAAAGAGCAGGCCTACAGTATACTGTGCATCGCACGGCCCTTCGAATCTGACCACATTCCTGCTGAGGAGTTGGGTTCTGTTCCTGCTCCGTACTGTCTGAAAAATATTGAGGATGTGAGGGAGTTTTTGGGCCGCCATGCTGAAAAACTGGACAAGTTTGTTTCCTCCTTCTGTCTCTCCTTTAAAGAACAGGAGAGGAAAGGCCTACGCCATCACATAGACTCGGTGAATACGCTTTACACCAGATGTCTTCAGTGTCTGCTGAGAGACTCTCGTCTGTTTGTCTTGATATATTTCTCTGTCTGTTGTTTCGTGTCTCTCCATTTTCAGATGTACATCCATCATGGCATCCATGATCTACTCTTTAGTTATGTGGGCACTCTTGAAGCTAGTCGGGATGCAGCGTTCAACAAAACAACACGGTCCTTGCAGGATCTGCAGCAGAAAGAGCTGGGAGTGAAGTCCGAGTTCAGTATTAATATTCCTCGGGCGAAGCGTGAGCTGATTCAGCTGAACGTCTGCACGTCTCCACAGCAGAAACTCCTCTGCATCCGGAAAGTCATTTTAACCATCATGCAGTCGACCAGACCGGTGAGCATCGAGTCCATGTGTGCCGATGATCTGCTGTTGGTCATTCTGTATCTGCTCATCAAGACAGAAATTCCCAACTGGATGGCCAATCTGAGTTATATAAAGCACTTCCGCTTTCGGAGCTCCAGCAAGGATGAGTTGAGTTACTGTCTGACGTCTTTCGAGGCCGCGGTCGAGTATATCAGCCTGGGAAACCTCAAACACAACACCGATGGGTCAGGAAACAGACTGTCCTTCAGGCAGAAGGTGGACCTACTGTCCCAGAATGCAACACCCATTGACCGGCTGTTTGAGCATATTGTGAGCGGAAATGAGCAGGAGGTTCAGCGTTTGCTCAGTGAAAGCGAGAGTGAGGAGGACGGCAGGAAGTTGTGTCACCCTCTGTGTTCCTGTGACGCCTGCGACCTGCGCATCTCTGGGAGATTGAATGATCCTTCCATCGTCACTCCATTCTCTCGAGACGACAGAGGATACACTCCTTTACATGTTGCTGCTATTTGTGGTCAGTCTCAGATGATTGATTTACTGGTGTCAAAGGGAGCAGTGGTAAACGCTACCGATTACCATGCACTCACACCGCTGCACCTCTCCTGCCAGAAGGGCTACCAGGGCGTCACGCTTCTCCTGCTGCATTATAAGGCCAACACTGATGCTCAGGACAACAATGGAAACACTCCTCTACATCTGGCCTGCATGTACGGACATGAAGACTGTGTGAAGGCGCTGGTGTACTTCGATCTGCACTGCTGTCGGCTGAACGTTCAGAACGATAAAGGAGACTCGCCGCTGCACATCGCCGCTCGCTGGGGATACGAGGGCATCATGGAGGTGCTGCTGGAGAACGGAGCGTCCACGCTCATCCACAATAAAGCCAAGGAGACGCCGCTGCACTGCGCGCTCAACTCCAAGGTCCACATTATCTGCGCTTCACATTCTGTACTGGCACAGGTGGAGAAGCTGTTGAGAGCCGTGGCTGACGGAGATGTGGAGATGgtgcgTTATCTCCTGGAGTGGCTCGATGAGGATCCAGATGAAGAGGAGTCTGCAGTGCCAGTCAAGACGGAGCTCTGCCATCCGCTGTGCCAGTGTGCCAACTGCGAACCCACACAGAAGAAGGCAGCTCATCTTCATCCAGACAGTGTGGGTGTAAACAGCAGCAGTGTTGACGGCTTCACGCCGCTGCATGTGGCGGCGCTGCATGGACACACACCTCTCATCTCTCTGTTCACACGCCACGGCGCAAACCTGAACGCTCGCAACAACCACAGCGCCACCCCACTGCACCTGGCCTGCCAGAACAACCACACAGAGgTGGTCTGTGCTCTCCTGGAGTGTAATGCCAAACTCAATAAGAAGGATCATTATGGGAACACACCGCTCATTCAGGCCTGTCTGAAGGGGAATCTGGAGATCGCCGGCGTCCTGCTGGAGAGCGGTGCGCTGGTAAATCTGGCCAATAACCACGGGAACACGGGTCTGCATGAGGCTGTGAGAGGAGCAAACGTGTCGCTGGTGGAGCTGCTGCTGCACAGAGGAGCTTCAGTTCACATCCGCAACAACAGACAGAGAACATCGCTGGACTGCGCACACGAGGCCAACTCAGAGATTTTGAGACTCCTTCAGAAAGCATATGATGAAGCCCAGACGCAAAGGGCCAGAGCACCAGAGGGCATCATGGGTAAGGACTAG
>TCONS_00048138
ATCTGCAGCAGAAAGAGCTGGGAGTGAAGTCCGAGTTCAGTATTAATATTCCTCGGGCGAAGCGTGAGCTGATTCAGCTGAACGTCTGCACGTCTCCACAGCAGAAACTCCTCTGCATCCGGAAAGTCATTTTAACCATCATGCAGTCGACCAGACGCAGAGATACAGCGGTGAGCATCGAGTCCATGTGTGCCGATGATCTGCTGTTGGTCATTCTGTATCTGCTCATCAAGACAGAAATTCCCAACTGGATGGCCAATCTGAGTTATATAAAGCACTTCCGCTTTCGGAGCTCCAGCAAGGATGAGTTGAGTTACTGTCTGACGTCTTTCGAGGCCGCGGTCGAGTATATCAGCCTGGGAAACCTCAAACACAACACCGATGTGAGCCAGACCTGCTTCTTTCATTCAGTTTTCTGCACAGCGTCACATGTTTGAGCAcacttacatttagtcatttagaagACGCTTTCGTCCAAATCGACATTCATCGATTTACCAA

Function

symbol description
ankrd27 Predicted to enable SNARE binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in early endosome to late endosome transport and neuron projection morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle; neuron projection; and plasma membrane. Human ortholog(s) of this gene implicated in eosinophilic esophagitis. Orthologous to human ANKRD27 (ankyrin repeat domain 27).

GO:

id name namespace
GO:1990126 retrograde transport, endosome to plasma membrane biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0045022 early endosome to late endosome transport biological_process
GO:0005769 early endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0097422 tubular endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-121105-1 Predicted to enable SNARE binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in early endosome to late endosome transport and neuron projection morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle; neuron projection; and plasma membrane. Human ortholog(s) of this gene implicated in eosinophilic esophagitis. Orthologous to human ANKRD27 (ankyrin repeat domain 27).

Ensembl:

ensembl_id ENSDARG00000089207

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048136 False 1977 mRNA 0.50 18 36405021 36428603
TCONS_00048137 False 2589 mRNA 0.52 22 36411624 36437925
TCONS_00048138 True 501 lncRNA 0.48 4 36418777 36421945

Neighbor

gene id symbol gene type direction distance location
XLOC_024324 NA coding upstream 981 36398512 ~ 36404040 (+)
XLOC_024323 NA coding upstream 21683 36376136 ~ 36383338 (+)
XLOC_024322 zgc:173552 coding upstream 55037 36349574 ~ 36349984 (+)
XLOC_024321 hist1h2a3 coding upstream 56009 36348401 ~ 36349012 (+)
XLOC_024320 si:ch211-113a14.22 coding upstream 57521 36347126 ~ 36347500 (+)
XLOC_024326 NA coding downstream 10659 36448584 ~ 36451721 (+)
XLOC_024327 FO904923.1 coding downstream 18875 36456800 ~ 36456918 (+)
XLOC_024328 CABZ01088576.1 coding downstream 71749 36509674 ~ 36509789 (+)
XLOC_024329 mafb coding downstream 236790 36674715 ~ 36676981 (+)
XLOC_024330 NA coding downstream 288665 36726590 ~ 36737258 (+)
XLOC_023973 CR762411.1 misc upstream 21186912 15217824 ~ 15218109 (+)
XLOC_024301 NA non-coding upstream 131434 36269642 ~ 36273587 (+)
XLOC_024299 CABZ01089081.1 non-coding upstream 304312 36096364 ~ 36100709 (+)
XLOC_024296 NA non-coding upstream 389585 35988910 ~ 36015436 (+)
XLOC_024331 CU929365.1 non-coding downstream 406202 36844127 ~ 36844249 (+)

Expression


Co-expression Network