RNA id: TCONS_00048145


Basic Information

Item Value
RNA id TCONS_00048145
length 1521
RNA type mRNA
GC content 0.55
exon number 7
gene id XLOC_024333
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 37209619 ~ 37215844 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGTGCGGAGTAGCTGCGCGTTCCCGCTTTCTGCCTGGTTCGAGGTGTATTGAAGGCGGGGAAAAACTGCAGATTAATGTTCAGCGAGACTCAAACTGCAGATCAAACTCCTGCTGAACTTCAAGATCAACATTTATCTCGAGATTATGATGATGAagctgctgctgtgtgtgtggatCATTTTCTCCAGCCAACTCTCCACATCTCAGGCACAAGAGTGTGAGGTGGTGAATTCTGCTCTCCAGCAGATGATGAAGACTCTCTCTGCGCACGAGATAAGTCTGAGGAGCCTCCAAAAAACTCTGAAGCAGATGCAGAACACCAGAACACACAgcacagCCTGTCCTCCGCCCCCGCCGCTGATGAACGGGCGTGTGCTGGGACGCATCTTCAGGATGGGTCATGAGATCCACTACCTGTGTGACGCAGGGTTCCAGCGGATGGGGCCCGAGAGCAGAGTGTGTCTGCAGTCTCTGAGCTGGAGCGACACACAGCCGTCCTGCCAGAGGCGGATATCTCCTGTCCTCTCAGATGCAGACACTGAGGGCAGCGCGATGAATGATGATGACGAACCCACCGCTCTACCTACATCCTCAACATTCTCATCATCTTCCTCTTCATCACTcctatcatcatcttcatcaacaGTCTTGTCCTCCGTCTACTTGAGGGCGTCTCGCTGTGTGGAGTTTCTGGACTCCATTCACTGCTCCTGTGATGCAGGATTCAGCATTTCCAGCTCCAACACCTCATTCTGCAtggaCATAGACGAGTGTGAGCTGTTCCGACACACTCCACCTGGCCGTGTGTGTGCGCACACCTGTGTGAATACAGCTGGAAGCTTCTACTGCCGCTGTCCGGATGGATACAAGCTCAGCCGAGATAGCAGGAGCTGCCACGaTGTGGACGAGTGTGTGCAGGCGGCTCATAACTGCAGCTCTGAGCAGGTGTGTGTGAACACTTACGGTGGACATCGCTGCGAACACATCCACTGTCCTGAGTTTCACAACGCCACATACATCAGGACATCAGCGCTGCGCTGTGAGAGGAGCCCGTGTGTTGAAGAGGACTCGGCGTGTCTGCAGGCTCCGCTCTCCGTCAGTTTCCACTTCATGTCGGTGGTCTCCAACATGCGGGTCCCCGTGGTCCTCTTCCGTGTGTCAGCGGAGCGGCTCCTGGGGGACTCTCTGCGCTTCAGTCTGCAGGGGAACAGCAGCGTTCAGCGGGTCAGCATTCAGCGCTCGGGCCCGGGGACCGCTCGGCTGGTGCTGCTGCGCTCAATACAGGGCCCGGATCAGCTGACGGTGGACATCCAGATAGACCAGACGGAGAAACGGAGGCTGATCGGGAGATATCTGACCAGAGTCACGCTCTTCATCTCACCGTACGACTTCtgaatcagcacacacacacacacacacacatgcacacacacacaccgaggtCACTGTACAGCTCATCTGAGAGAAATCTCTAAGATTAAAGTCCCCCTGATCTGGAAGCTGCTGCCATTTTCTTTT

Function

GO:

id name namespace
GO:0048251 elastic fiber assembly biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-422 Predicted to enable calcium ion binding activity. Predicted to be involved in elastic fiber assembly.

Ensembl:

ensembl_id ENSDART00000112192

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049065 lncRNA upstream 472361 36728508 ~ 36737258 (+) True XLOC_024330
TCONS_00049294 lncRNA upstream 472418 36726590 ~ 36737201 (+) False XLOC_024330
TCONS_00049291 lncRNA upstream 757898 36448954 ~ 36451721 (+) False XLOC_024326
TCONS_00048154 lncRNA downstream 115284 37331128 ~ 37337143 (+) True XLOC_024339
TCONS_00048168 lncRNA downstream 250813 37466657 ~ 37476172 (+) False XLOC_024345
TCONS_00048167 lncRNA downstream 250813 37466657 ~ 37476172 (+) True XLOC_024345
TCONS_00048143 mRNA upstream 72173 37126921 ~ 37137446 (+) False XLOC_024332
TCONS_00048144 mRNA upstream 74707 37130450 ~ 37134912 (+) True XLOC_024332
TCONS_00048141 mRNA upstream 532638 36674715 ~ 36676981 (+) True XLOC_024329
TCONS_00048137 mRNA upstream 771694 36411624 ~ 36437925 (+) False XLOC_024325
TCONS_00048136 mRNA upstream 781016 36405021 ~ 36428603 (+) False XLOC_024325
TCONS_00048146 mRNA downstream 53056 37268900 ~ 37277392 (+) True XLOC_024334
TCONS_00048147 mRNA downstream 69893 37285737 ~ 37288184 (+) True XLOC_024335
TCONS_00048148 mRNA downstream 73244 37289088 ~ 37297514 (+) False XLOC_024336
TCONS_00048149 mRNA downstream 74362 37290206 ~ 37290726 (+) True XLOC_024337
TCONS_00048150 mRNA downstream 77468 37293312 ~ 37317174 (+) False XLOC_024336
TCONS_00048142 other upstream 365370 36844127 ~ 36844249 (+) True XLOC_024331
TCONS_00048140 other upstream 699830 36509674 ~ 36509789 (+) True XLOC_024328
TCONS_00048139 other upstream 752701 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048100 other upstream 1328088 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048053 other upstream 2418153 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048157 other downstream 150854 37366698 ~ 37366955 (+) False XLOC_024341
TCONS_00048162 other downstream 219517 37435361 ~ 37439792 (+) False XLOC_024342

Expression Profile

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