XLOC_024343 (slc10a3)


Basic Information

Item Value
gene id XLOC_024343
gene name slc10a3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 37443194 ~ 37445449 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048164
CTGAGGATTAACAGCAGTCTCTGACCTACAGCTGCGTTTCTGAGCAGCACCGCGGAGTCCAGAGCCATGAGATGATGGAGATCCTGACCTGAAGTGAGTCTGAGTGTGAATGAGCGGATCCGGATTGATCTGATGAGTGCAGGAGTGGAGCGGAGCGGCTGCTGGAGTCATGAAGACAGCACTggtgttcctctgtctgctgttCCTCACCTGCGCTGGAGACCCGGATCACACTGAGCCCAGAACACTGCAGTACCTGCGCATCGGCGACGGCTCCGCTCGAGAGTTCCAGTTCCCCCAGAACACACGCGGCGTCATCGTGATCTCCAGCCAGTACCGCAGCTCCGGGGGCCGCAAGGGCCGAGACAGCCTGAAGCAGACTCTGCGGGTCCGGTCTCTAGATCCAGACGTCA
>TCONS_00048165
CTGAGGATTAACAGCAGTCTCTGACCTACAGCTGCGTTTCTGAGCAGCACCGCGGAGTCCAGAGCCATGAGATGATGGAGATCCTGACCTGAAGTGAGTCTGAGTGTGAATGAGCGGATCCGGATTGATCTGATGAGTGCAGGAGTGGAGCGGAGCGGCTGCTGGAGTCATGAAGACAGCACTggtgttcctctgtctgctgttCCTCACCTGCGCTGGAGACCCGGATCACACTGAGCCCAGAACACTGCAGTACCTGCGCATCGGCGACGGCTCCGCTCGAGAGTTCCAGTTCCCCCAGAACACACGCGGCGTCATCGTGATCTCCAGCCAGTACCGCAGCTCCGGGGGCCGCAAGGGCCGAGACAGCCTGAAGCAGACTCTGCGGGTCCGGTCTCTAGATCCAGACGTCATCTCCATCCTGAACGTGAGCGACAGCGGGCCGCAGAGCAGCTACACCATCAGCATCCGCTCAGGGCTCCCGGGGACGGCACCGCTGCTTCTCCAGCTGCTGGAGCTGAGCCGGGACGCGGAGCCGCTGCTGATCGAGGAGCGCAGCGACTACTCCATCAGGGTGGAGGCCGCACCAGAACACATGGAGGCCGGCGGGCTGCAGCACTTCTCGGAGAACCCGGTGCTGTTCGCCCTGCTGCCGCTGATCTTCGTCAACAAGTGTGCGTTCGGCTGTAAGGTGGAGGTGGAGGTGCTGCTGGCGCTGCTGCGGAGGCCGGTGCCGCTGCTGCTGGGTGTCGCTGCGCAGTTCCTGCTGATGCCCCTCTACGCCTTCGCCCTGTCCCAGCTGGCGGCGCTGCCTACTGCGCTGGCGCTCGGCCTGGTCATCACCTGCTCGGCTCCGGGTGGTGGTGGTGGCTACCTGTACAGCCTGCTGCTGGGTGGAGACGTCACCCTCGCCATCTGCATGACCCTGGTGTCCACGGTGGTGGCGACCGCTGCCATGCCGCTGTCCTCCGCCTTGTACGGCCGGCTGCTGGGCGTCCACGCCGCGCTCCACGTGCCCTTCGTTAAGATCCTGGGCACGCTGCTGTTCATCGCCATCCCGATCTCGCTGGGGCTGCTGGTGAAGCTGCGAGTGCCCGCGGTGGCCAGCGTCCTGCTCGCCCTCATCCGCCCCTTCAGCTTCGTGCTGATCGTCGGCGGCATCTTCATGGCCTATCAGATGGGCTCCTCCATCCTGGCTCACGTGCGCGCCCCGATGGTGGTGGTGGGCGTGACGGTGCCGGTGTTCGGGCTGCTGGCGGGGCTGGCGCTGGCACGGCTGGCGGGGCTGGCGTCTCCTCAGAGGAGGACGGTGGGCATCGAGGTGGGCGTGCAGAACAGTCTCCTGGCGCTGGCCGTCATGCAGCTGTCCTTCCAGCGGGCGGAGGCCGACTACGCCTCTCAGGCGCCCTTCATCGTGGCGCTCAGCAGCACCTCCGAGATGCTCCTGCTGGTGCTGGCACACATCGCCCGCAGCCGCCTGTGCCCGCCGGCGCCCGCCACCCGCACCCTCAGCTGAGCGCCCGCCGGACACACTGACCAACACACTGCCATCGCCCAGGCCAACACCAAACGCCTTCGGACACTTGCACACGCTCGCAGAGATATACGCTCAACGACAGACCCATGTGCTGCACTACGGgacattctgattggctgacgatgATCGGAGGCCAGAGGAGGAGAGCGGTGATGATGGAGGATCATGCAGGATACTGTGACGCGCATCCCTCCTCTGAGGAGTGTGAGCAGTGACATGAGGAATGGTCTCGTGATGTTCTCTACAGCACACACTCCTGTGATTACTGCCAGCGCTCTTCTGCTCCTGTACGGCCTTATTTCTTACACACTTTATTCTGTCCAACTGCTGAGAACGTCTCCAGAACATCTCCTGATCATCTCCTGATCATCTCCAGACACTGACCGGATCTGTCCTGAGCGCATATATTTTTGCAGTGTTGATCTTCTTTTGTAAATCAGAGTTTAATAAGccaatcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctacaGCCACAGTGTTGATCAGAGCTGATATTTTTCTAAGTGATTGTTCTTTTGTAATGGGTTTGTTTGTATCTTGtttacagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcggctgaTGTTGTGTACTCTCGATTGTTCAATGATGACGACTTGTGATTAAATGCTTTTGACATg

Function

symbol description
slc10a3 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC10A3 (solute carrier family 10 member 3).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015721 bile acid and bile salt transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2347 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC10A3 (solute carrier family 10 member 3).

Ensembl:

ensembl_id ENSDARG00000103220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048164 False 413 mRNA 0.60 1 37443194 37443606
TCONS_00048165 True 2256 mRNA 0.60 1 37443194 37445449

Neighbor

gene id symbol gene type direction distance location
XLOC_024342 chmp1a coding upstream 1537 37435335 ~ 37441657 (+)
XLOC_024341 slc1a2b coding upstream 35437 37366698 ~ 37407757 (+)
XLOC_024340 pamr1 coding upstream 77592 37340722 ~ 37365602 (+)
XLOC_024339 CU207301.3 coding upstream 106051 37331128 ~ 37337143 (+)
XLOC_024338 si:dkey-234i14.14 coding upstream 143062 37299390 ~ 37300132 (+)
XLOC_024344 FO834799.1 coding downstream 1412 37446861 ~ 37460976 (+)
XLOC_024345 FO834799.2 coding downstream 21208 37466657 ~ 37476172 (+)
XLOC_024346 CABZ01095001.1 coding downstream 34836 37480285 ~ 37483366 (+)
XLOC_023973 CR762411.1 misc upstream 22225085 15217824 ~ 15218109 (+)
XLOC_024331 CU929365.1 non-coding upstream 598945 36844127 ~ 36844249 (+)
XLOC_024330 NA non-coding upstream 705936 36726590 ~ 36737258 (+)
XLOC_024328 CABZ01088576.1 non-coding upstream 933405 36509674 ~ 36509789 (+)
XLOC_024327 FO904923.1 non-coding upstream 986276 36456800 ~ 36456918 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000191_00377204_00378580 SLC10A3, P3 coding CI01000191 null 376992 ~ 378876 (+)