RNA id: TCONS_00048164


Basic Information

Item Value
RNA id TCONS_00048164
length 413
RNA type mRNA
GC content 0.60
exon number 1
gene id XLOC_024343
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 37443194 ~ 37445449 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAGGATTAACAGCAGTCTCTGACCTACAGCTGCGTTTCTGAGCAGCACCGCGGAGTCCAGAGCCATGAGATGATGGAGATCCTGACCTGAAGTGAGTCTGAGTGTGAATGAGCGGATCCGGATTGATCTGATGAGTGCAGGAGTGGAGCGGAGCGGCTGCTGGAGTCATGAAGACAGCACTggtgttcctctgtctgctgttCCTCACCTGCGCTGGAGACCCGGATCACACTGAGCCCAGAACACTGCAGTACCTGCGCATCGGCGACGGCTCCGCTCGAGAGTTCCAGTTCCCCCAGAACACACGCGGCGTCATCGTGATCTCCAGCCAGTACCGCAGCTCCGGGGGCCGCAAGGGCCGAGACAGCCTGAAGCAGACTCTGCGGGTCCGGTCTCTAGATCCAGACGTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015721 bile acid and bile salt transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2347 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC10A3 (solute carrier family 10 member 3).

Ensembl:

ensembl_id ENSDART00000163178

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048154 lncRNA upstream 106051 37331128 ~ 37337143 (+) True XLOC_024339
TCONS_00049065 lncRNA upstream 705936 36728508 ~ 36737258 (+) True XLOC_024330
TCONS_00049294 lncRNA upstream 705993 36726590 ~ 36737201 (+) False XLOC_024330
TCONS_00049292 lncRNA upstream 991473 36449078 ~ 36451721 (+) False XLOC_024326
TCONS_00048168 lncRNA downstream 23051 37466657 ~ 37476172 (+) False XLOC_024345
TCONS_00048167 lncRNA downstream 23051 37466657 ~ 37476172 (+) True XLOC_024345
TCONS_00048161 mRNA upstream 1537 37435335 ~ 37441657 (+) False XLOC_024342
TCONS_00048163 mRNA upstream 1991 37435720 ~ 37441203 (+) True XLOC_024342
TCONS_00048158 mRNA upstream 35437 37366698 ~ 37407757 (+) False XLOC_024341
TCONS_00048160 mRNA upstream 35437 37397031 ~ 37407757 (+) True XLOC_024341
TCONS_00048159 mRNA upstream 37787 37397031 ~ 37405407 (+) False XLOC_024341
TCONS_00048166 mRNA downstream 3255 37446861 ~ 37460976 (+) True XLOC_024344
TCONS_00048169 mRNA downstream 36679 37480285 ~ 37483366 (+) True XLOC_024346
TCONS_00048162 other upstream 3402 37435361 ~ 37439792 (+) False XLOC_024342
TCONS_00048157 other upstream 76239 37366698 ~ 37366955 (+) False XLOC_024341
TCONS_00048142 other upstream 598945 36844127 ~ 36844249 (+) True XLOC_024331
TCONS_00048140 other upstream 933405 36509674 ~ 36509789 (+) True XLOC_024328
TCONS_00048139 other upstream 986276 36456800 ~ 36456918 (+) True XLOC_024327

Expression Profile

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