RNA id: TCONS_00048166


Basic Information

Item Value
RNA id TCONS_00048166
length 3956
RNA type mRNA
GC content 0.57
exon number 39
gene id XLOC_024344
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 37446861 ~ 37460976 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGAGCTCCACAGCAGACCCGGAACAGCTCACACACACCTCTGTCACGGCTCTGCTCGcgcGCAGATCTCTGAAGAGACccagagatgatgatgatgatgatgaagagcagCTGCAGGAGTCCTGTGTGAATCTGCTGATGAGGAACCAGAACACATCACTGCTGCTGCAGGAGATCACGGCTCAGAGGAGGATCAGTGGTGCAGGTCTGGAgctccacacacacatgcagacggCAGCGCTGGaggacGAGCTGCGCAGACTCTCTCAGCTGACGGACGTCCCTCTCTCTCTGCTGTGTGTGAGGGttgtgactgaagctctgcaggATCGGATCTCACACACTGATCACGTGCTGCTGAGCGCTGAACAGAGGGTATGCCACCGTCACTGTAGTCTGATCACACTCTGCCTGATGCCTGAACtcatgcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgTGGTGTGTGTCCTGGTCAGGAGGGCTTTTGAAGACTGCACTCATAAACTCTCTCAGAAGTGTGTCTTCATTCTGGACTCCATGCTGacctggctGCTGGACTCACTGAATGAAAAAGACACAGAAACATCAGCCGCTTCAGTCTGGATTCAGGTGTTTGATGCAtcagtgtttggtgtgtgtgtttctgaggaCACACTGCGGCagttcttcacacacacactcacgcgtGTTCTCACACACCGGCCCGTGTTTACagtgtcagATGCCATCGCTGTACAGAGTGACTGGAGCTTTGCTAAAACTCCTGCGCTGCTGACGGCTCTCTTCCGCAAGctgtgtGTGTTGTTCAGTGTGCAGTGTGTGTTGGCTCAGCTCCAGCAGGTGTTGGAGACTCATGAGGTGAACTGGCGTCTGATCCTGTGCTGTGTGTCTCATCTGCTGGTGTTCGACTCTCAGACGCAGAGCTGTCtctcagaggtgCTGCGTGCGCTCCTCAGCTCGGCGTTCCTCCTCTTCGATGTGGAGCAGATGATCAGTGTGTTCCTGCTGGCGCGGCAGGCGGCTCTCGAGGGCCCAGCGGTGTTCCAGTCCTACAGCGACTGGTTTAAGCTGTCGTTTGCTGGAGCGAGCGGCGCTCACGCTAAGAGCAAGAAGACCACTGTGTTCCTGCTCAAGTTCCTGTCAGATCTGGTGCCGTTTGAGCCGCCGCAGTACCtgaagGTTCATGTCCTGCATCCTCCGTTCGTCTCTGGAAAGTTCCGCTCGGTGCTGCAGGAGTACGTCAGCCTCGCCAGGACCCGTCTCCGAGACCTGAAGgtgtctCTGGAGGAGTCGGGCATCTTTGAGGTGGTGAACGGCTCTGCTGGCGCTCCTGTGTGCGGGGCTCAGCAGGATGTGGAGAAGGCCGTCACACTCTTCATCAACACTGGGAAGATCCCAGCTACAGTCATAGAggccagtatCTTCAGGAGGCCGTATTTCATGTCTCGCTTTCTCCCAGCGCTGCTCTCGCCACGAGTGcTTCCTCCTCAAGCAGACGGCAGGATGTCCTTCATCGAGGCCCTGAGGAGAGCGGAGAAGATCCCGGCGGCGCTCTACTGCTCCTACACTGAGTCCTgtcagagagagacacacacactcagagaagGTGAGCTGGATAAAACGCGCAcacactctaacacacacactaacacacactcagAGAAGTACTGCACAATGACACGgctgttgtgttgttgtttagGGAGACATCaAGTGTGTGCTCAGCTTTCCAGGATCTCTCTGACTCTGAAGAACATCAACACTGATGAGGACACAAGAAGTGATGTCATCACCCTCGACCTGCTCTCAGCTGATTGGACACACGCAGCGCTCGCCGGTCTGATCCTCCAGAGCTTCTGTCTGTGCATACTGGACGCAGCGAAGATCAGTCCTCCAAACaggcagGGCTCGTGGGCGTGTGTGTTGGTCAAGGCTCTGCTGGCGCACAGATGGCTGATCTCGGCTCTTCTACACAGACTGTGGGATCTGCTGCAGCACCAGggcGAGGCTCTGAGCGCCGCTCATGTGTTGGGTTTGTCTGCTCTGCATGTGGAGCTGCATCGCTGCCGGAGTGTGTGTCCTCCTGTGCAGCTGCTGCCGTCTGCAGACGCTCgctgtgtgtctgagtgtgtgtgtgacgctCTGAGCTGCTGCacggacacacacatgcacacctgcCTCAGGTTCTGTGTGTCGGTTCTCTCCTATGGTCTCTGCAGAGCCACCGCTCAGGCTGAAGAGCTGCACGTCTTCATCCCACACACACTCTTCAAGAAGgctcaGTTTGTGATGTCCCGGCTGGTCCCGGAGACGCGGGCGCTGCTGATTGGTGAACAGGTCTCTGAGCCTCTGTGTGCGCCCGCTGGAGGCCTGCAGGAGTCGGCTGTGGCTctgtggagaaacacacacatccAGGCGCTGAGGAGACGGCCTGAGTATCagCTCTCCTTCTCTGATTGGCTCACAGCAGAACTACAGGTCCAGCGGAGCCGAGACGCACTCACTGATGCTGAGAGgcagGAGTTCCAGCAGTGGGCCTGTGAGCTCTACTATCTGCCCATGGCTGCAGCAGACGGCGGCTGTGGAGGAGACGTCACTCAGAGCTGCGCTCGCATCATCACTGCGCTTCTGGACCAACACACAacCAGCCTAGCAACAGCACAGCGCAACCACACCCCTAGCGACGGTTGTCAGGTGTCGTGTGCATCTTCTCTGCAGGCGCTGCTGTATGAAGAGGCCGTCACTCCACAGAAGACTCCAGATGACGCACATCACTTCCTCTGGGACCTGATTGAGAGCAGGTGCTCCGTGACCCCTGACCCCCAGTGCATCGCAGAGCAGCTCAGATACCAGCAGACGCTCCAGAACATTAgccgtgtggtgTGTGTGGTTCCTGCCGCTCTGCTGCTCAGGGTTCAGACTGGCGGATCAGCTCTGGACTGCAGGAGGATGATCAAACACATCACTGATGTGCAGatgagGACGTGTGTTCCTGATGCTCTGCTGTCCTGCAAGCTGACCGCACTCTTCCTCAAAgccaTAGTGAGCGGCAGTGTGAGCTGTAGATCTCCGGCTGACGCAgtgaacgagtgtgtgtgtgtgttcagcactCGGTGTCCTCTGCTGCTCCTGTCCGCCATGcgcTGGTGGCCGCGTGTGTCCTCTGTGCTGGTGTGTCAGTGGAGGCGTCTCACCGCTGGAGAACCACTGCCTGATCAGCTGCAGATGCTGGAGGACACACACCGCTGGAGCTCAcgtgtgtgtggcGGTCTGTCCTCCTCGGCTCCAGCGGCTCCATCATGGCTGCTGGCTGCGGCTCTACAGGCTTCACTGCAGCACTCGGACCCCACAGCGGCTCTCGCTCAGctcgaccacacacacacacagGTGCTGCTCTACCTGTTCCTCTACAGTATAATAGAGCTGATCTCTGCACACCTCAGCCaacaggagtGTGTGGAGCGTGTCAGAGGCGTGTGCGTGTGTCTCCTCACTCGTCTTCAGGgtcattctgattggctgctgctgtTCGATCAGTGtggatcagATCATGAGCTGTGTGAGTTCAGGACGCGTGTGATTTCCCATCATGCCCTGCGTCTGCTGCCGCTGGCCTTCTACAGtgttCTGTGTGCGGTGGACTCACAGCTCCTCCAGGGATTGGTCAGTTCTCCAGGATTCCTCCACAGCGCCGGCGTCTCCTACAGGAAGCTGAGTGAGCTGTACCTGAGTGCTAAGAGCGCAGGCCGgccgcaggtgctGCAGGACGCGCGGCGTGTTCTCCTGAGCTGCATCTCTCTGAGTTCTCCCGACGGTCTGACGTGTGCTCAGAGGAAGCAGCTGCAGTCTGAGTTCGAGCAGCTGGACGCAGAGATGGCAGCAGCGTTCGGGGGGAAACACACCAGCACCCGCGGACAAACATGAACACACCTGAGCTCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000189250

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048154 lncRNA upstream 109718 37331128 ~ 37337143 (+) True XLOC_024339
TCONS_00049065 lncRNA upstream 709603 36728508 ~ 36737258 (+) True XLOC_024330
TCONS_00049294 lncRNA upstream 709660 36726590 ~ 36737201 (+) False XLOC_024330
TCONS_00049292 lncRNA upstream 995140 36449078 ~ 36451721 (+) False XLOC_024326
TCONS_00048168 lncRNA downstream 5681 37466657 ~ 37476172 (+) False XLOC_024345
TCONS_00048167 lncRNA downstream 5681 37466657 ~ 37476172 (+) True XLOC_024345
TCONS_00048165 mRNA upstream 1412 37443194 ~ 37445449 (+) True XLOC_024343
TCONS_00048164 mRNA upstream 3255 37443194 ~ 37443606 (+) False XLOC_024343
TCONS_00048161 mRNA upstream 5204 37435335 ~ 37441657 (+) False XLOC_024342
TCONS_00048163 mRNA upstream 5658 37435720 ~ 37441203 (+) True XLOC_024342
TCONS_00048158 mRNA upstream 39104 37366698 ~ 37407757 (+) False XLOC_024341
TCONS_00048169 mRNA downstream 19309 37480285 ~ 37483366 (+) True XLOC_024346
TCONS_00048162 other upstream 7069 37435361 ~ 37439792 (+) False XLOC_024342
TCONS_00048157 other upstream 79906 37366698 ~ 37366955 (+) False XLOC_024341
TCONS_00048142 other upstream 602612 36844127 ~ 36844249 (+) True XLOC_024331
TCONS_00048140 other upstream 937072 36509674 ~ 36509789 (+) True XLOC_024328
TCONS_00048139 other upstream 989943 36456800 ~ 36456918 (+) True XLOC_024327

Expression Profile

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