XLOC_024372 (znf609a)


Basic Information

Item Value
gene id XLOC_024372
gene name znf609a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 821725 ~ 998096 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048192
tcCTAGACTCAAACAAACTCCCACCCGCGTGTCCCAATCTAGACCGCAGAACTCCACCTCCGTGTTTTCCTCCAGAAACTCCGCTCCATCTGGATCCTTGTGTCCGTACTGCGCATGCGCTCATGTTGAGTTGCGTTGCTTCAATGTCTCGCAGCGAGAGCTGCAAACAAGCGTAAAGAGCCATTAGAGCTCTAGTGGAGGCAAAGCAAAGCACTGTTCCCCTGCAGCTCGCTTTTCTGCGTGTGTTTGGACCTAAAAACGTCGCTTTCTGGGAATCTATCAGTCTGAAAATCAAGGACTAGCTGTATTTCAACACCCCGGATCGAAACCCGAGGCGAAATGTGGTTTTCCCAGCCGCTTTTGTCGCTGGATATGGAGTAGATCTGAACTGTTCTCATGCAACCGGCCTGGCTGTGGATCtccagtgtgtgtgaatgtgtgtgtgcatgggtctgcgtgtgtgtggatgtgtgtgtaagcCCAGCACATTTCCTTGGAGGGTTGTTTTAGTGTCTTTTGGATCTATGGGATGCTTGTAGATCGGGCTGGATCCTCCGGGGGGGCAACAATGTGGGTTACTGGGAAGGGGAAGCCAACAGGACCCTAAGGCTTGTGTAGATGTGCCTCCTGACCACCCGAGTCGTCTGAGAAGGTCAGACCTCACTGTGGCACCCTTGGGCCGCTGGCACTAAGATGTCCCTCAGTAGTGGCACTGCAGGCGGGAAAGGTGTGGACTCGAATGCGGTGGACACTTACGACAGCGGGGATGAGTGGGATATTGGTGTAGGCAACCTGATCATTGACCTTGACGCAGATTTAGAGAAAGACAAGCTTGAGATGTCCGGCACCAAGGACGGGGACGGAATGGCTGCTGCCTCCAGTGCCGTAGCGGCATTGCCAGACAACATAAAGTTTATTAACCCGGTGCCGCCTCCGCCAATTAAGGACAGCAAATCCAAAGCGAAACGTAGCAAGAATTCCAAGGACAGTACCAAGTCCTCAACCCCAGATGGGGTCAAGAAGGATGCCCAGGGACGGACTCAAAATGAGGGCGCTGGGCCAACTGCTGGAAACCTACCTTCCGGGAAAGGTTCTGATAAAGCTAACAAGGCCTCCCGTAATGTTCAGAGTGGAAAAAAGGACAAGGAGGCTTCTGGGAAAAGTAAAAAGGAGAAAAACGAAGGAGTACAAACTGGGAATGTGCCCTCGGAAAAGGACTCGTTGGTCCAGGTGATACCTTTGGGCCAGGCACGCAATACCCCATTTGAGGCGACGCAAAATTCGGACCTCGTTGGTGCTGACCAACTAGGGAATATAACCCTTGATACCACTGGAATAATCACACCTTTGGCTATCaagagtgagccagaagaagtGGAAAATAATGATTGCAGGTCCATGAAGAAAGTGAAAAGCGAGAAGATGGAGTCTCCGGTGTCGACGCCGGCTCCTCCGCCGCTCCACCTCCTGGCTCCAGTGGGGAACAGTGAAATCTCCTCCTCCTGTGAGCAGATTATGGTCCGCACGCGCTCAGTAGCCGTCAACACCTCAGACGTGGCTCTGGCTACTGAACCCGAATGTTTGGGTCCCTGCGAACCCGGAACCAGCGTCAACCTGGAGGGCATCGTCTGGCAGGAGACGGAGGACGGTATGCTGGTGGTGAATGTCACCTGGAGGAACAAGACGTATGTGGGCACTCTTTTAGACTGCACTCGACATGACTGGGCGCCGCCACGATTCTGTGAGTCGCCAACAAGTGACCTGGAGATGAGAAACGGCCGTGGCCGGGGTAAAAGAATGAGACCCAACAGCAATACACCAGTCAATGAGAACAGCAACTCTTCTGATAACAAAGGcagcaacaacagcaaaacaCGGGCCGCGTCCAACAGTAAAGGCCGCCGGGGCAGTCAGAACTCCTCAGAGCGCCGCACGCCACCAAACAGCAACACTGAGGACGTAAAAGCCAGCCCATCCTCTGCTAACAAACGCAAGAACAAACCTCCCTCAGACATGGAGCCCAATTCCAGTTCAGAGGACACCAAGGGCAGCAAACGGATGCGCACCAATTCTAACAGTGGGATACCTCATACTGTTCTACCCCTTTCCAATGTTAAAGCGGAATCATTGCCACCTTCATTGGACCGCAGTTGCTCCTCTCCAGTCCTCATCGACTGCCCGCATCCTAACTGCAATAAGAAGTACAAGCACATCAATGGATTGAAGTATCACCAAGCCCGTGCTCACAATGACGACGACGTCAAGCTAGACATAGACGGCGATAGCGAAAATGGCGAGGATTCGACTTTGCATCCCGAGCCAGGCAGTTGCAACGGTGCATCTATTTCCCAGAAGGGTTGTGCATCTCCTGCACGGTCAGTCACTCCAAAAGGACGAGGATTTGATGCTCAGAGTCCATCGCCGTCTGGAAAGATGAGCTCCAAACAGCCTGGCAAGAAAAAATCAGATGCAGAGCATGACTCTGGAATGCCTATGGATGGTTGTGAGGATGGACCGTGTCTTACTGATGACACTAGCAATGATGGGATCGATGATAAAAGAGGTTTGGATAAAGCTAAGAAGGCTGGGAGTGGTTCTAAGCTTGCTCAGAAAGCAATGAAGTCTGCAAGACCACCGCTTGTTCCCTCAATGCCTACGCAGCAATTGTACAACTTGCCAGCCTCTGGATTCCCGGCGCCCAGTTCTGGATCGTCCACAAGTATGGGTTCTGTAGTGGTTCAGCCGATAAGTAAAAGCCCGCAGCTGAAAAACATTCAACCCAAACCTGCAGTCATAGCAGATCCGGCAATGAACCAAGCTGTGAGTGGCTCCAAGGACAAGAAGAAGAAAGATAAGAAAAAGAAGGAGGGTGGAAAGGAAGGAGACAGTCCGAAAGCGAAAGGAGGGAAACCTGAGGAAGGTAAAAGCCCATATTCTGAGAGTTCAGACCAAGGCGGGAGGAATGAAGGGATGTTAAATGGATCCTCAGATCCACATCAGAGCCGCCTTGCAAGCATGAAAGCTGAAGCCGACAAAATATACAGCTTTTCTGACAATTCCCCTAGTCCTTGCATTGGTGTGGCTAGTCGGATAGAAACCGGAGGGATCGCACAACCTTTAACTCCACTTCACGTGGTAACCCAAAACGGGGCGGATAACTCTTCTGTGAAGACCAACAGCCCAGCATATTCTGACATCTCTGATGCAGGCGAGGATGGAGAAGGTAAAGTCGACAGTACGAAAGTCAAATCTGAAGATCCGGCAGTTCGGGAAGGTGCCAAGAAAACCCTGTTCCCATCCCAGCCGCCAAACAAAGACTCCTCCTATTATCCAGGTTTTGAATACTACTCCCCTAATAACAACACTTACGGCAACCCCAGTCCAGGAGTCTCTAATACGGCAACCTCCCTGCAAGAAGGTCCGGTAAAGGTAAAGAAAGAAGAGGAGCCAGAATTGCAAGGCATTGAAAAACCCAAATCAGAGCCTCCAGAAGATCGAAAGCCAGACGTTGTTGTTGGATCTTctcaacaacagcagcagcagcagcaacaacagcagCCTTCAGTTATCCAGCAGCGTTCCAGCATGTTCATGCAACCGCTTTATTATAATCAGTATGCATACGTGCATCCCTTTGGATATTCTCCAGATCAGGCCTATCACAACCACCTGATGAACCCAGCGTACAGACAGCAGTGTGAGGACAGACAACGACAAGTAGCCGAGCAACATCGAGCCTCTGAGAAAAAATCTGAAGCCGCTCAGAAAGAGAGGGAAGCTCAGATGAAGCCGGAAGAGTGGAAACAGAAAGCTTCAGTTCCTCCTACGTTGTCTAAAGCTCCAAGTGTTTCAGATTTGGGCAAGCCGTCTCCGCAGGGCAAGCCCAAAGAGTCTGCCGAGCCTGGCAAATCAGTCATTATTCCTAAAGGGGAAGAAGGCAAGGGGCCGAGCCAGCAAGGTGAAGGGTTGAAAATGAAGCTGAGTGAAGCAGGGCATCATGGGAAGGACGAGCAGAAACCAAGCCTGGAGTCTGGAAGATCGGCTATGGAGCAGGCAATGTACATGTATAGACAGGAGCCGGATTCTCGATTGTGGCCCTATGTTTACCCCAGCAAGTACCCTGATCCTCAAAAACAAATTGACGAGGAGCGATGGAAGGAAGAGCGAGAAAGGGATCGCGAGCGGGAAAAGGACCGAGATCGAGACCGAGAACGTGAGAGAGAACGAAAGAGTAAAGACGAAAGGCAGCGTCCCAAAGACACGCCATCGAAAGAGGAAAACAAAGAAGAACCACGAACTTCATCATCCGCAGAGGAGCACAGAGTCAGTAAAGACCCGCGAGCACACATGCAGTTTTCCACACCTCTGGCACAGCATCAGTCCTATATGTCTTACATGCACGGATACCCCTATGGACAGGGTTACGACCCCAGCCATCCAGGGTACAGGGGTATGCCTGCGGTTGTGATGCAAAATTACCCTGGATCGTACCTGTCCCCAGGCTACTCATTTTCTCCATACGGCAGTAAGATGGCGCCGGGTGAAGAGGCTGAGAAAGCTCGATCCAGTCCCACAGTGAGCGGAAAATCTGCATCTGAGTCCAAAGCTCTGGATATGCTCCAACAGCACGCTAGCCAGTACAAGAGCAAATCGCCCACAGTGGCAGAGAAAACGACCCATGACCGAGAGCGCAGTGGAGCTGAGAGGGAGAGAGACGGAGAACGACCCAGATCTTCACCCTCGCAGCGGATGATCCCGTCACATCATCACCTCGGATATCAGCTGCTGCCGGGACAGTACGACCTGTCCTACGCTACAGgtATCTCCTCTTCAGCCATTGTTGCTAGTCAACAGGCCTCTGCCCCTTCACTTTACCCTCCCGCACGGAGGTGAGAATG
>TCONS_00048193
AGTTGCTCAAcagatgcgcgcacacacacatgtacgcTTTCACATTCAATGCATGCACAGCAGCTAATCTGGTAACGTGAGAGTCGGATAAAGCCATCATACAGATGGAGTCTCCGGTGTCGACGCCGGCTCCTCCGCCGCTCCACCTCCTGGCTCCAGTGGGGAACAGTGAAATCTCCTCCTCCTGTGAGCAGATTATGGTCCGCACGCGCTCAGTAGCCGTCAACACCTCAGACGTGGCTCTGGCTACTGAACCCGAATGTTTGGGTCCCTGCGAACCCGGAACCAGCGTCAACCTGGAGGGCATCGTCTGGCAGGAGACGGAGGACGGTA
>TCONS_00048194
AAAGCAAAGCACTGTTCCCCTGCAGCTCGCTTTTCTGCGTGTGTTTGGACCTAAAAACGTCGCTTTCTGGGAATCTATCAGTCTGAAAATCAAGGACTAGCTGTATTTCAACACCCCGGATCGAAACCCGAGGCGAAATGTGGTTTTCCCAGCCGCTTTTGTCGCTGGATATGGAGTAGATCTGAACTGTTCTCATGCAACCGGCCTGGCTGTGGATCtccagtgtgtgtgaatgtgtgtgtgcatgggtctgcgtgtgtgtggatgtgtgtgtaagcCCAGCACATTTCCTTGGAGGGTTGTTTTAGTGTCTTTTGGATCTATGGGATGCTTGTAGATCGGGCTGGATCCTCCGGGGGGGCAACAATGTGGGTTACTGGGAAGGGGAAGCCAACAGGACCCTAAGGCTTGTGTAGATGTGCCTCCTGACCACCCGAGTCGTCTGAGAAGGTCAGACCTCACTGTGGCACCCTTGGGCCGCTGGCACTAAGATGTCCCTCAGTAGTGGCACTGCAGGCGGGAAAGGTGTGGACTCGAATGCGGTGGACACTTACGACAGCGGGGATGAGTGGGATATTGGTGTAGGCAACCTGATCATTGACCTTGACGCAGATTTAGAGAAAGACAAGCTTGAGATGTCCGGCACCAAGGACGGGGACGGAATGGCTGCTGCCTCCAGTGCCGTAGCGGCATTGCCAGACAACATAAAGTTTATTAACCCGGTGCCGCCTCCGCCAATTAAGGACAGCAAATCCAAAGCGAAACGTAGCAAGAATTCCAAGGACAGTACCAAGTCCTCAACCCCAGATGGGGTCAAGAAGGATGCCCAGGGACGGACTCAAAATGAGGGCGCTGGGCCAACTGCTGGAAACCTACCTTCCGGGAAAGGTTCTGATAAAGCTAACAAGGCCTCCCGTAATGTTCAGAGTGGAAAAAAGGACAAGGAGGCTTCTGGGAAAAGTAAAAAGGAGAAAAACGAAGGAGTACAAACTGGGAATGTGCCCTCGGAAAAGGACTCGTTGGTCCAGGTGATACCTTTGGGCCAGGCACGCAATACCCCATTTGAGGCGACGCAAAATTCGGACCTCGTTGGTGCTGACCAACTAGGGAATATAACCCTTGATACCACTGGAATAATCACACCTTTGGCTATCaagagtgagccagaagaagtGGAAAATAATGATTGCAGGTCCATGAAGAAAGTGAAAAGCGAGAAGATGGAGTCTCCGGTGTCGACGCCGGCTCCTCCGCCGCTCCACCTCCTGGCTCCAGTGGGGAACAGTGAAATCTCCTCCTCCTGTGAGCAGATTATGGTCCGCACGCGCTCAGTAGCCGTCAACACCTCAGACGTGGCTCTGGCTACTGAACCCGAATGTTTGGGTCCCTGCGAACCCGGAACCAGCGTCAACCTGGAGGGCATCGTCTGGCAGGAGACGGAGGACGGTA

Function

symbol description
znf609a Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF609 (zinc finger protein 609).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6219 Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF609 (zinc finger protein 609).

Ensembl:

ensembl_id ENSDARG00000103388

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048192 False 4898 mRNA 0.52 8 821725 998096
TCONS_00048193 False 333 mRNA 0.57 2 867146 893464
TCONS_00048194 True 1449 mRNA 0.53 3 867146 997894

Neighbor

gene id symbol gene type direction distance location
XLOC_024371 irak4 coding downstream 47254 768014 ~ 774471 (-)
XLOC_024370 tmem117 coding downstream 69567 710139 ~ 752158 (-)
XLOC_024369 NA coding downstream 178619 630933 ~ 643106 (-)
XLOC_024368 myo9ab coding downstream 267583 485353 ~ 554142 (-)
XLOC_024367 si:ch1073-385f13.3 coding downstream 337917 479997 ~ 483808 (-)
XLOC_024373 FO907089.1 coding upstream 49531 1047627 ~ 1079417 (-)
XLOC_024374 spg11 coding upstream 90597 1088693 ~ 1126311 (-)
XLOC_024375 CU861469.1 coding upstream 197186 1195282 ~ 1196112 (-)
XLOC_024376 coro2bb coding upstream 222183 1220279 ~ 1235457 (-)
XLOC_024377 calml4b coding upstream 268849 1266945 ~ 1323928 (-)
XLOC_024366 NA non-coding downstream 365247 455319 ~ 456478 (-)
XLOC_024363 NA non-coding downstream 457957 360538 ~ 363768 (-)
XLOC_024361 NA non-coding downstream 516068 305008 ~ 305657 (-)
XLOC_024360 NA non-coding downstream 527116 287659 ~ 294609 (-)
XLOC_024380 CR354429.1 non-coding upstream 466283 1464379 ~ 1471185 (-)
XLOC_024381 NA non-coding upstream 626784 1624880 ~ 1625918 (-)
XLOC_024382 dre-let-7i non-coding upstream 631559 1629655 ~ 1629749 (-)
XLOC_024385 NA non-coding upstream 948272 1946368 ~ 1951444 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G339996 NA unknown CI01000127 null 297101 ~ 297537 (+)