XLOC_024378 (cln6b)


Basic Information

Item Value
gene id XLOC_024378
gene name cln6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 1325946 ~ 1334504 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048205
AGACAGGcttgatttattcatttgctcATTTCCTAAATCTCTCCATCTCAGTGAACCCGAAGAGAGTAGCGTTTTGTACTGTGTTTCAGACCCAAACATCAGGATTCAGGATGTTTTTATCCTTGTGTTTTACTCACTGATGTGGAAAACGACCATCTGAGGCCGCCGAGATGCCGACTGTCATCCGCAAAAGGCAAAACTGTGGCCTGAGCACCACATTTTTGAGCAGATGTGGATTGAGGGAGTTGAGAGAGTCCTGTCTGACCCCAGATCAGTTTCACAGCTGTTTCTGGTGCTGCTTTACTCTACAGAACTGGCTGCTAGACATCGGCAGACCTGTAATAACGATCTTCTGTCCACTGGATTGGTTTCCTCTGAACAAACCCAGCGCTGCGGATTATTGCCACATGTTGTACAACATCACAACACCTTTCCTGCTGCTCAAGctgatgGAGCGCAGCCCGAAGACACTGCCGCGCTCCGCCATGTACCTGTGCATCATCACCTTCGTCATGGGCTCCAGCATTCACCTGCTCGGGGAATCCATAAACCAGCGGCTGCTGATCAGCGGATACCAGACACACCTGACACTCAGAGAAAACCCCATTATTAAGAGCATCTCACCACACACActgATCGACTCATTTGAGTTACTGCAGTATTATGATGAAAGTCTGGGCCTCTGTATGTGGTACGTTCCTCTGTTTCTCATCCTGTTCCTGTATTTCACTGGATGTTTCACTATCGTCAAAGCAGAGAAGAAGATGCCCGTCTCCGCTTGGATTCTACTGGGTCCCAGTGGCCTTTACTACTGGTATCTGGTGACAGAAGGACAGATTTTCATCCCATTTATTTTCACGTTTTTCGCCATGATGGCTACAGTCCTGCATCAGAAGCGTAAAGGTTTTCTTCCTGACAGTAATGGACTGTTTCTGCTCTACAGTTTCTCGATTTCGCTCTTTTTAGTGAGCGTCTGGGTCGCCTGTCTGTGGAACGATAAAGTGTTGCGGAAGAAATATCCAGGAGTGATGTATATCCCAGAACCGTGGGCTCTTTACACATTACACCTCAGAGACAAACACACCACGCTTACAGACTGAAAATATCACTTACAACACAAAACATAAACTGCTTCCATCATTTCacagttgtttatttgttttcagaGTCCATTTCACGTCTCATTCCTGAAGTATTTTTACTCTATTCGAAGTAGTCAAGATTGATTTTCTTCAGTATtactcataaaaaaaaacaagattccAGTTTTGTTGCTTTCTAATTCCTTCATCATTCACCTTCATATTTCATTTCTTATGGTCA
>TCONS_00048207
ATGCTTCATCATATTTCTCATTATCTTTTCATATTTGTCATTGTGTGTTTCAGATGTGGATTGAGGGAGTTGAGAGAGTCCTGTCTGACCCCAGATCAGTTTCACAGCTGTTTCTGGTGCTGCTTTACTCTACAGAACTGGCTGCTAGACATCGGCAGACCTATCTTCTGTCCACTGGATTGGTTTCCTCTGAACAAACCCAGCGCTGCGGATTATTGCCACATGTTGTACAACATCACAACACCTTTCCTGCTGCTCAAGATCGACTCATTTGAGTTACTGCAGTATTATGATGAAAGTCTGGGCCTCTGTATGTGGTACGTTCCTCTGTTTCTCATCCTGTTCCTGTATTTCACTGGATGTTTCACTATCGTCAAAGCAGAGAAGAAGATGCCCGTCTCCGCTTGGATTCTACTGGGTCCCAGTGGCCTTTACTACTGGTATCTGGTGACAGAAGGACAGATTTTCATCCCATTTATTTTCACGTTTTTCGCCATGATGGCTACAGTCCTGCATCAGAAGCGTAAAGGTTTTCTTCCTGACAGTAATGGACTGTTTCTGCTCTACAGTTTCTCGATTTCGCTCTTTTTAGTGAGCGTCTGGGTCGCCTGTCTGTGGAACGATAAAGTGTTGCGGAAGAAATATCCAGGAGTGATGTATATCCCAGAACCGTGGGCTCTTTACACATTACACCTCAGAGACAAACACACCACGCTTACAGACTGA
>TCONS_00048206
ATGCTTCATCATATTTCTCATTATCTTTTCATATTTGTCATTGTGTGTTTCAGATGTGGATTGAGGGAGTTGAGAGAGTCCTGTCTGACCCCAGATCAGTTTCACAGCTGTTTCTGGTGCTGCTTTACTCTACAGAACTGGCTGCTAGACATCGGCAGACCTATCTTCTGTCCACTGGATTGGTTTCCTCTGAACAAACCCAGCGCTGCGGATTATTGCCACATGTTGTACAACATCACAACACCTTTCCTGCTGCTCAAGctgatgGAGCGCAGCCCGAAGACACTGCCGCGCTCCGCCATGTACCTGTGCATCATCACCTTCGTCATGGGCTCCAGCATTCACCTGCTCGGGGAATCCATAAACCAGCGGCTGCTGATCAGCGGATACCAGACACACCTGACACTCAGAGAAAACCCCATTATTAAGAGCATCTCACCACACACActggtaaaacacacacacacacacacacacacacgcacacacacacacactatacactgcagaaataaaaaatatagGTACGTTCCTCTGTTTCTCATCCTGTTCCTGTATTTCACTGGATGTTTCACTATCGTCAAAGCAGAGAAGAAGATGCCCGTCTCCGCTTGGATTCTACTGGGTCCCAGTGGCCTTTACTACTGGTATCTGGTGACAGAAGGACAGATTTTCATCCCATTTATTTTCACGTTTTTCGCCATGATGGCTACAGTCCTGCATCAGAAGCGTAAAGGTTTTCTTCCTGACAGTAATGGACTGTTTCTGCTCTACAGTTTCTCGATTTCGCTCTTTTTAGTGAGCGTCTGGGTCGCCTGTCTGTGGAACGATAAAGTGTTGCGGAAGAAATATCCAGGAGTGATGTATATCCCAGAACCGTGGGCTCTTTACACATTACACCTCAGAGACAAACACACCACGCTTACAGACTGA

Function

symbol description
cln6b Predicted to be involved in lysosome organization. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis; neuronal ceroid lipofuscinosis 4A; and neuronal ceroid lipofuscinosis 6. Orthologous to human CLN6 (CLN6 transmembrane ER protein).

GO:

id name namespace
GO:0007040 lysosome organization biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110623-6 Predicted to be involved in lysosome organization. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis; neuronal ceroid lipofuscinosis 4A; and neuronal ceroid lipofuscinosis 6. Orthologous to human CLN6 (CLN6 transmembrane ER protein).

Ensembl:

ensembl_id ENSDARG00000090002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048205 False 1323 mRNA 0.45 7 1325946 1334504
TCONS_00048207 False 726 mRNA 0.45 5 1326169 1333676
TCONS_00048206 True 933 mRNA 0.47 5 1326169 1333676

Neighbor

gene id symbol gene type direction distance location
XLOC_024377 calml4b coding downstream 2018 1266945 ~ 1323928 (-)
XLOC_024376 coro2bb coding downstream 90489 1220279 ~ 1235457 (-)
XLOC_024375 CU861469.1 coding downstream 129834 1195282 ~ 1196112 (-)
XLOC_024374 spg11 coding downstream 199635 1088693 ~ 1126311 (-)
XLOC_024373 FO907089.1 coding downstream 246529 1047627 ~ 1079417 (-)
XLOC_024379 itga11b coding upstream 8657 1343161 ~ 1426876 (-)
XLOC_024380 CR354429.1 coding upstream 129875 1464379 ~ 1471185 (-)
XLOC_024381 NA coding upstream 290376 1624880 ~ 1625918 (-)
XLOC_024382 dre-let-7i coding upstream 295151 1629655 ~ 1629749 (-)
XLOC_024383 mon2 coding upstream 297324 1631828 ~ 1687481 (-)
XLOC_024369 NA non-coding downstream 682840 630933 ~ 643106 (-)
XLOC_024366 NA non-coding downstream 869468 455319 ~ 456478 (-)
XLOC_024363 NA non-coding downstream 962178 360538 ~ 363768 (-)
XLOC_024361 NA non-coding downstream 1020289 305008 ~ 305657 (-)
XLOC_024385 NA non-coding upstream 611864 1946368 ~ 1951444 (-)
XLOC_024386 CR385026.2 non-coding upstream 639020 1973524 ~ 1974290 (-)

Expression


Co-expression Network