LOC118936679 (LOC106607655)


Basic Information

Item Value
gene id LOC118936679
gene name LOC106607655
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44657459 ~ 44658756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052585.1
ATTAAATTCTGAATTCATCATTGTCAATTTTTATTGCAGCATGAGGTGAAACGGAGACGTAAACCTGAGGATACAAAGGAGAACAAACGACGGAAACAAACCTTCAAATACCATGTACAGCAAGCAGGCCAGAGATTGAATGTGTGCAAGATGCTGACAGATGCTGTGGGCAGAATAACAACTGGCGGATGCTCAATCTGATGTCGATGCTCGTCTCTATGGGTTACTTTACCCAAGTTGAGCAGAAGTTCATGGTCTCTGGTCATTCTTTTCTTCCTTGTGATCGATCTTTTGCCACCATCGAGAAGAGGCGCAAGGTGTCAGTCCTTCATACACCTGATGATGTTTCAAAGATGATACTTGAAGCACAACCAGCAAAACCATTCAAGGTGATGAGGATGCAATGTGAAGACTTCAGGCACCTCCCAGATTCTGTCCTCAAGCGACCAGCTGGACTACAGATCACCTCAGTGAGGTGGTTAAAAGTCACAGTTGAGGATCCTTGGAATCTGTACACCAGACAGAGCCACAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAACAAGGAGCTACACCTCAACCTCCCTATTTTGCAAGCCACTACCCTAGAGCATATGAGAGTCCTCTGCCCATCAAAAAAAACAAGTACCAAGATCTGATGACCATGCTCAACTACTTGCCAGCTGCTGCACGCTCTTTTTATGAATCACTGCAGAGTGAATAATTTGTTGTTAAACCAAGCTACATAATTAAACGTTTTTTTCTGTGAGTTTATGATCCCCTGAAcctgtatactgtagtatgttGAATCTGTATACATTTCAGAAGACATGTCACCCCTATTGTAGGAAATTAAATGTATCGTAGGTGTTTTCTATGTGAATCAATTTGTGTATGATTTGAATCAGCACAATATATTGAATTAATTTAATGTTAAGATGTTGTTCCTAGTGTAGAAAATGTTATGTACAATGTGTTCTGTTGATAATAATTTTGTGTGATCATTTGAACCTTTTttaatctgaatgaattaaaaac
>XR_005052586.1
ATTAAATTCTGAATTCATCATTGTCAATTTTTATTGCAGCATGAGGTGAAACGGAGACGTAAACCTGAGGATACAAAGGAGAACAAACGACGGAAACAAACCTTCAAATACCATGTACAGCAAGCAGGCCAGAGATTGAATGTGTGCAAGATGCTGTGGGCAGAATAACAACTGGCGGATGCTCAATCTGATGTCGATGCTCGTCTCTATGGGTTACTTTACCCAAGTTGAGCAGAAGTTCATGGTCTCTGGTCATTCTTTTCTTCCTTGTGATCGATCTTTTGCCACCATCGAGAAGAGGCGCAAGGTGTCAGTCCTTCATACACCTGATGATGTTTCAAAGATGATACTTGAAGCACAACCAGCAAAACCATTCAAGGTGATGAGGATGCAATGTGAAGACTTCAGGCACCTCCCAGATTCTGTCCTCAAGCGACCAGCTGGACTACAGATCACCTCAGTGAGGTGGTTAAAAGTCACAGTTGAGGATCCTTGGAATCTGTACACCAGACAGAGCCACAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAACAAGGAGCTACACCTCAACCTCCCTATTTTGCAAGCCACTACCCTAGAGCATATGAGAGTCCTCTGCCCATCAAAAAAAACAAGTACCAAGATCTGATGACCATGCTCAACTACTTGCCAGCTGCTGCACGCTCTTTTTATGAATCACTGCAGAGTGAATAATTTGTTGTTAAACCAAGCTACATAATTAAACGTTTTTTTCTGTGAGTTTATGATCCCCTGAAcctgtatactgtagtatgttGAATCTGTATACATTTCAGAAGACATGTCACCCCTATTGTAGGAAATTAAATGTATCGTAGGTGTTTTCTATGTGAATCAATTTGTGTATGATTTGAATCAGCACAATATATTGAATTAATTTAATGTTAAGATGTTGTTCCTAGTGTAGAAAATGTTATGTACAATGTGTTCTGTTGATAATAATTTTGTGTGATCATTTGAACCTTTTttaatctgaatgaattaaaaac
>TU696606
CGGAGACGTAAACCTGAGGATACAAAGGAGAACAAACGACGGAAACAAACCTTCAAATACCATGTACAGCAAGCAGGCCAGAGATTGAATGTGTGCAAGATGCTGACAGATGCTGTGGGCAGAATAACAACTGGCGGATGCTCAATCTGATGTCGATGCTCGTCTCTATGGGTTACTTTACCCAAGTTGAGCAGAAGTTCATGGTCTCTGGTCATTCTTTTCTTCCTTGTGATCGATCTTTTGCCACCATCGAGAAGAGGCGCAAGGTGTCAGTCCTTCATACACCTGATGATGTTTCAAAGATGATACTTGAAGCACAACCAGCAAAACCATTCAAGTTGAGGATCCTTGGAATCTGTACACCAGACAGAGCCACAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAACAAGGAGCTACACCTCAACCTCCCTATTTTGCAAGCCACTACCCTAGAGCATATGAGAGTCCTCTGCCCATCAAAAAAAACAAGTACCAAGATCTGATGACCATGCTCAACTACTTGCCAGCTGCTGCACGCTCTTTTTATGAATCACTGCAGAGTGAATAATTTGTTGTTAAACCAAGCTACATAATTAAACGTTTT

Function

NR:

description
uncharacterized protein LOC110524522

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052585.1 False 1051 mRNA 0.40 3 44657459 44658756
XR_005052586.1 False 1041 mRNA 0.40 3 44657459 44658756
TU696606 True 619 lncRNA 0.44 3 44657737 44658705

Neighbor

gene id symbol gene type direction distance location
LOC110527858 LOC106582773 coding downstream 27747 44627888 ~ 44629712 (-)
LOC110527861 LOC106582773 coding downstream 32778 44623094 ~ 44624681 (-)
LOC110527855 LOC106582968 coding downstream 43831 44612093 ~ 44613628 (-)
LOC118965287 LOC106582968 coding downstream 47127 44608797 ~ 44610332 (-)
LOC110527856 LOC106582843 coding downstream 50127 44606061 ~ 44607348 (-)
cntn4 LOC106582845 coding upstream 144253 44803009 ~ 44981651 (-)
LOC110527866 LOC106582846 coding upstream 426764 45085520 ~ 45171406 (-)
chl1b LOC100380675 coding upstream 578117 45236873 ~ 45312977 (-)
ppp4r2b LOC106582851 coding upstream 1066556 45725312 ~ 45731514 (-)
LOC110527871 LOC106582850 coding upstream 1075601 45734357 ~ 45750837 (-)
G611768 LOC106582843 non-coding downstream 17190 44634346 ~ 44640269 (-)
G611767 NA non-coding downstream 23469 44633782 ~ 44633990 (-)
G611730 NA non-coding downstream 80962 44576237 ~ 44576497 (-)
G611696 NA non-coding downstream 128230 44528931 ~ 44529229 (-)
G611955 NA non-coding upstream 123227 44781983 ~ 44782270 (-)
G611970 NA non-coding upstream 135706 44794462 ~ 44794673 (-)
G611980 NA non-coding upstream 141409 44800165 ~ 44800483 (-)
G612183 NA non-coding upstream 220222 44878978 ~ 44881153 (-)
G611674 NA other downstream 171707 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 1077495 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 1120494 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 1218546 43435578 ~ 43439076 (-)
G610185 NA other downstream 1500370 43151570 ~ 43157089 (-)
G613411 LOC106582852 other upstream 1216209 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 2609567 47260325 ~ 47284791 (-)
G616880 NA other upstream 3828291 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 4525668 49184424 ~ 49186096 (-)
G617632 NA other upstream 4536848 49195604 ~ 49195970 (-)

Expression


Co-expression Network