LOC110527856 (LOC106582843)


Basic Information

Item Value
gene id LOC110527856
gene name LOC106582843
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44606061 ~ 44607348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527856
CCTCTACAGCACAGAGATCCAGCCATGGTACCTACAATCACTTCAACTATGATCTACTCTAAGGAGCACCTGACTCTGACAAACAAGCTAAGAAAGCCAGTGGTGGAGAAGTTACGCAGAGATCGTAAAAACAGCATTGAGCAGCTCAAGTCTCTCCTGGTTCCAGAGATCCTCAACCAGCAGTCCGACTCTAAGCTGGACAAAGCCGACATTCTTGAGATGACAGTTTGCTTCCTGAGATGACAGCAACAGAACGAGCTAGTGAGTTCCTCCTCCTGCTCAGCACCTGTCAATCAGGGTTACTCCAGGTGTGTCCAAGTGATTGTTCACTTCCTGTCTAATGGATGGACCATGTTGGTCTAAGATTAATTTCATGGACAGTAATGAGTATAATAAAATAGATTCTTCATCTTCTGCTTATGCAGGAGTTTTTTAAGTCTTGCTGTGAGACGTTTAATTAAAGTTGTACTGAACAAGTTAACGTTCTCTGAGAAAATGATCAAATCGATAATTGAaataatgttaatgttttgtGAAACATGTTGATTACATTGATCGTGTTTTTATATTCATGATCAACAATAACTTTAATGCTCCTCCATGAGAACTTTTCACCCACAATAGATATTATATAATCAGTCTGTTTGTGATTATCTATGACTGATCTTTTTGAAGGTCAAAATATATAAGACAAAAACCTATTGCCTCTACATTTGTGTAGTGATATAGTCATATTGACATTGTATTGAGCATCTTCTGTGAAGCATGTATCAGTTATATATTTGATATTGATCAACAGGAGCTACAGCATCAATGTTCCTCCGTGGGGATTATTTACCCAAACTGGGTATTATACCCTTTGTCATCACTCTGTGATAAACAATATTTTATCTGTTTTTCAGAAAATGTTGCTCACATTAAATTAATAGTTTGTATATTGCATTGAAaaacttgttttaaaaaaaacatttatattgCATTTTATAAAGACAGTAACGGTGTATCCTGTACTCTGATAGAGTATCATATCTTGGAGATTTGTTCAAGTTCTTGTTGTGATGTTTAATCACTGTATTTCTGTTGAAATATTTACCTTAAATTAAAGTATTCAATGATGTGAGTCAGTCTGAATAAATACACAAATCATCAAATGAAA
>TU696481
ATTCTCTCTACACAGACCTCTACAGCACAGAGATCCAGCCATGGTACCTACAATCACTTCAACTATGATCTACTCTAAGGAGCACCTGACTCTGACAAACAAGCTAAGAAAGCCAGTGGTGGAGAAGTTACGCAGAGATCGTAAAAACAGCATTGAGCAGCTCAAGTCTCTCCTGGTTCCAGAGATCCTCAACCAGCAGTCCGACTCTAAGCTGGACAAAGCCGACATTCTTGAGATGACAGTTTGCTTCCTGAGATGACAGCAACAGAACGAGCTAGTGAGTTCCTCCTCCTGCTCAGCACCTGTCAATCAGGGTTACTCCAGGTGTGTCCAAGTGATTGTTCAC

Function

NR:

description
transcription factor HES-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527856 False 1156 mRNA 0.48 2 44606061 44607332
TU696481 True 346 lncRNA 0.48 2 44606887 44607348

Neighbor

gene id symbol gene type direction distance location
lbp/bpi-1 lbp/bpi-1 coding downstream 3138 44595759 ~ 44602923 (-)
ghrh LOC106582839 coding downstream 15663 44586310 ~ 44590398 (-)
LOC110527846 LOC106582831 coding downstream 285591 44315503 ~ 44320470 (-)
si:ch211-222l21.1 NA coding downstream 311965 44291263 ~ 44294096 (-)
prxl2b fam213b coding downstream 336756 44261628 ~ 44269305 (-)
LOC118965287 LOC106582968 coding upstream 1465 44608797 ~ 44610332 (-)
LOC110527855 LOC106582968 coding upstream 4761 44612093 ~ 44613628 (-)
LOC110527861 LOC106582773 coding upstream 15762 44623094 ~ 44624681 (-)
LOC110527858 LOC106582773 coding upstream 20556 44627888 ~ 44629712 (-)
LOC118936679 LOC106607655 coding upstream 50127 44657459 ~ 44658756 (-)
G611730 NA non-coding downstream 29564 44576237 ~ 44576497 (-)
G611696 NA non-coding downstream 76832 44528931 ~ 44529229 (-)
G611694 NA non-coding downstream 78780 44527080 ~ 44527281 (-)
G611693 NA non-coding downstream 79341 44526017 ~ 44526720 (-)
G611582 NA non-coding downstream 81089 44520554 ~ 44524972 (-)
G611767 NA non-coding upstream 26450 44633782 ~ 44633990 (-)
G611768 LOC106582843 non-coding upstream 27014 44634346 ~ 44640269 (-)
G611955 NA non-coding upstream 174651 44781983 ~ 44782270 (-)
G611970 NA non-coding upstream 187130 44794462 ~ 44794673 (-)
G611674 NA other downstream 120309 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 1026097 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 1069096 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 1167148 43435578 ~ 43439076 (-)
G610185 NA other downstream 1448972 43151570 ~ 43157089 (-)
G613411 LOC106582852 other upstream 1267633 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 2660991 47260325 ~ 47284791 (-)
G616880 NA other upstream 3879715 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 4577092 49184424 ~ 49186096 (-)
G617632 NA other upstream 4588272 49195604 ~ 49195970 (-)

Expression


Co-expression Network